leonarski_fandClaude Opus 5
a739b156f3
The second pass re-indexes de novo and can land in a different setting from the first - most often on the PRIMITIVE sub-cell of a centred lattice. The reindex that exists to undo that declines when the metric does not match, and the code then went on to stamp pass 1's group onto the cell regardless. That is not a small error. A C-centred group on an already-primitive cell means the centring absence rule removes half the reflections that genuinely exist, so the merge holds more unique reflections than its own cell can - measured here as "117% complete" with CC1/2 0.62, against the first pass's 92.6% and 0.98, on a cell of exactly half the C-centred volume. Detect the conflict where it happens and feed it to the pass-2 credibility guard rather than acting on it locally: letting the pass re-search its own group instead produced a P1 answer on a crystal XDS and the first pass both call C2, which is a worse outcome than simply not trusting the pass. The completeness and CC1/2 tests stay as the symptom-side net. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Jungfraujoch
Application to receive data from the PSI JUNGFRAU and EIGER detectors.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.