leonarski_f 9cb5cc6237 Refinement: placement steps kept only where R-free drops; a wider weight ladder
On deposited models the per-residue B shift raised R-free at every resolution tried (2.56 A: 0.320 ->
0.327) and the rigid bodies rarely helped; each is now kept only where it lowers R-free by more than the
0.001 tie, otherwise the model goes on as it was. The positions' weight ladder runs from 1/1024 to 1/32 of
the gradient-balanced weight: the R-free optimum sat near 1/500 at 2.6 A and near 1/50 at 1.1-1.7 A.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu
(cherry picked from commit d444fb03f610db70903de04f53f0489a71540b37)
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Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

S
Description
Jungfraujoch Data Acquisition System, Rugnux Data Processing Application, and Diffraction Viewer
Readme GPL-3.0
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