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leonarski_fandClaude Opus 5.5 9830fe9dd0

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broker: redoc regenerated from the merged API (blob distance optional, live refinement on the CPU too)

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu

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.gitea/workflows

CI: the documentation also pushed to the gitea-pages branch of rugnux/gitea-pages, on every push for now (token test)

2026-10-26 11:39:10 +01:00

acquisition_device

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

broker

broker: redoc regenerated from the merged API (blob distance optional, live refinement on the CPU too)

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common

Stills: the run's rocking curve goes to _process.h5 and --mode scale merges with it; MeasureRunWidth takes the window at each reflection's resolution

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compression

v1.0.0-rc.175 (#85 )

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detector_control

v1.0.0-rc.175 (#85 )

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docker

1.0.0-rc.174 (#84 )

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docs

CHANGELOG: 1.0.0-rc.180 entry

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etc

v1.0.0-rc.166 (#76 )

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fpga

v1.0.0-rc.180: VERSION and update_version.sh

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frame_serialize

v1.0.0-rc.179 (#90 )

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frontend

rugnux live: a score that is not finite is left out of the status, not sent as null

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gemmi_gph

Refinement restraints: the CCP4 Monomer Library subset embedded in rugnux, read through gemmi's MonLib

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image_analysis

Refinement: a B factor is held at its bound by the whole target's gradient, restraints included

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image_puller

v1.0.0-rc.178 (#88 )

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image_pusher

v1.0.0-rc.178 (#88 )

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include

v1.0.0-rc.133

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jungfrau

v1.0.0-rc.153 (#63 )

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licenses

fast-feedback-indexer vendored in image_analysis/indexing/fast-feedback-indexer instead of fetched

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preview

v1.0.0-rc.179 (#90 )

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reader

Stills: the run's rocking curve goes to _process.h5 and --mode scale merges with it; MeasureRunWidth takes the window at each reflection's resolution

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receiver

rugnux live: a score that is not finite is left out of the status, not sent as null

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rugnux

Refinement: an exception in a trial slot or in RefineModel no longer ends the run

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tests

Refinement restraints: contacts with lattice translates are kept, and an atom's own symmetry contact once

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tools

rugnux: a placed model is refined by default - giving a model is the opt-in

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viewer

rugnux: a placed model is refined by default - giving a model is the opt-in

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writer

Stills: the run's rocking curve goes to _process.h5 and --mode scale merges with it; MeasureRunWidth takes the window at each reflection's resolution

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xds-plugin

v1.0.0-rc.175 (#85 )

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.gitattributes

v1.0.0-rc.153 (#63 )

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.gitignore

Refinement restraints: the CCP4 Monomer Library subset embedded in rugnux, read through gemmi's MonLib

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.readthedocs.yaml

version 1.0.0-rc.25

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CLAUDE.md

fast-feedback-indexer vendored in image_analysis/indexing/fast-feedback-indexer instead of fetched

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CMakeLists.txt

fast-feedback-indexer vendored in image_analysis/indexing/fast-feedback-indexer instead of fetched

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CONTRIBUTING.md

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

gen_python_client.sh

v1.0.0.rc-161 (#71 )

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gitea_create_release.py

v1.0.0-rc.94

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gitea_upload_file.py

v1.0.0-rc.156 (#66 )

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LICENSE

v1.0.0-rc.175 (#85 )

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make_doc.sh

v1.0.0.rc-161 (#71 )

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README.md

1.0.0-rc.174 (#84 )

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THIRD_PARTY_NOTICES.md

Refinement restraints: metal ions bound to their donors by the model's LINK records

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update_version.sh

v1.0.0-rc.175 (#85 )

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VERSION

v1.0.0-rc.180: VERSION and update_version.sh

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README.md

Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.