leonarski_fandClaude Opus 5.5
97cac203a6
Pure refactor, no behaviour change. The 2460-line function with ~25 lambdas
becomes Rugnux::FirstPassRun (RugnuxFirstPass.h): the state the steps share
(spot cache, validation frames, schemes, committed spot-list state, the
speculative passes) as members, and one member function per step taking
and returning the standing lattice (FirstPass). FirstPassRotationIndexing is
now the ordered list of decisions:
PrefetchCertainFrames, IndexSchemes (+ centre/short-axis speculation),
AxisSignRescue, BeamCentreCheck (IndexAtMeasuredCentre,
CentreWhenFileFails, CentreByPooledSpots, CentreWhenBothIndex,
CentresDisagree), LongAxisRescue, AddEndWedge, ReleaseSpotEngines,
RequireLattice, ShortAxisHypothesis, SubLatticeHypothesis, Pass1Fallback,
last-resort FirstPassLadder, MeasureVerdict, RejectChanceLattice,
AdoptLattice, StartLeftoverCensus, ReportTiltWalk, MeasureSpotBudget,
Pass1SupercellGuard.
Files: RugnuxFirstPass.cpp (order + shared machinery: spots, scoring,
schemes, ladder), RugnuxFirstPassRescues.cpp, RugnuxFirstPassAccept.cpp.
Bodies are moved verbatim (Rugnux members reached through rx.); every log
line is unchanged. Literal duplicates folded: the two MAX_SPOT_KEYS
constants, and the feed-every-scheme / run-every-indexer loops of the
long-axis rescue and the short-axis fallback (now FeedSchemes/RunIndexing,
the same calls in the same order). The leftover census, which outlives the
pass, captures what it needs explicitly instead of [&].
Verified against the rc175 0b2dde214 binary on 16 sets (7kcn, 8v4o, 5nw5,
9rci, 6z9g, 9min, nothing_1/2, 7atg, myob/cytc_x10sa, 8a1a, kdp, insu low
ISa, 6p8j, 9qw8) and -N 8 on 7kcn/8v4o/9rci: p.mtz md5-identical, logs
identical as multisets apart from timings.
Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SVmAWnzCmRKAXVUCdc4iNi
Jungfraujoch
Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with
rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular
and small-molecule - from images to merged reflections.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.