leonarski_fandClaude Opus 5.5
96a8ed3e4e
A rotation run whose first pass found no lattice threw NoLatticeFound before any canonical pass, so no image was ever reported as the canonical pass: the live scan result and the master file's per-image arrays were empty, and the CLI wrote nothing per image. Run() now catches it, runs one output pass over every frame with spot finding and the per-image analysis but indexing off (SpotFindingPass: header geometry, the run's spot finding, pre-scan mask kept; the first pass, supercell probe, rotation finalize and merge skip a pass with indexing off), reports it through the observer as the canonical pass, hands the result back on the exception (NoLatticeFound::per_image) and rethrows - the verdict and the report are unchanged. Skipped when cancelled and when Run has no observer (the live lattice probe). The CLI writes that result where a run that indexed nothing puts its per-image analysis: the _process.h5 (streamed by the sink with --no-merge or --write-process-h5, otherwise written from the end message) and the _plot.txt; the exit status stays 1. An output pass with no sink now fills the end message's per-image arrays (ScanResultGenerator) for that file, which it claimed to carry but did not. The no-lattice hint no longer points at --mode azint for the per-image analysis. Measured offline on two 16M no-crystal controls (1800 frames): the extra pass is 1.6 s, wall +1.2-2.3 s. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01PXc1zD1yxHqaR1DGdCTHL4
Jungfraujoch
Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with
rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular
and small-molecule - from images to merged reflections.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.