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Jungfraujoch/tools
leonarski_fandClaude Opus 5.5 74363b7219 paper_plots: R-free figure from the refined protocol on the shared free set by default
The R-free figure now draws refmac_refined_rfree_shared(_depdata): the deposited model refined
against each data set at its own resolution, R-free over the depositor's free reflections both data
sets share. --rfree first-cycle keeps the previous first-cycle rigid-body pair at the common
resolution. With the rechecked hq-pool3 runs the figure covers 160 structures (was 135).

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01D1G8gJVAy6gp1K5Dz3NE5C
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