leonarski_f
d6389e12da
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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * jfjoch_process: Major rotation (rot3d) data processing overhaul - robust profile-fit integration, Cauchy-loss scaling with optional absorption surface, de-novo indexing and space-group/centering determination fixes, and merging statistics + ISa in the mmCIF output. * jfjoch_process: Add EXPERIMENTAL ice-ring detection (--detect-ice-rings) that excludes ice reflections from scaling. * Compression: Add BSHUF_ZSTD_RLE_HUFF, make compression size-aware (drop frames that don't fit rather than aborting), and add the jfjoch_recompress tool. * jfjoch_viewer: Report "Multiple lattices detected" and grey out "Analyze dataset" on a live connection. * jfjoch_broker: Write smargon chi/phi goniometer positions to NXmx; read sensor thickness/material from HDF5 metadata. * CI: Build Windows (CUDA and non-CUDA) installers.Reviewed-on: #66 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
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92 lines
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<!--
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Auto-generated from THIRD_PARTY_NOTICES.md by update_version.sh — do not hand-edit.
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Edit the canonical THIRD_PARTY_NOTICES.md at the repository root instead.
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-->
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# Third-party software notices
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Jungfraujoch is licensed under **GPL-3.0** (see [`LICENSE`](LICENSE.md)); the FPGA design is
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licensed under **CERN-OHL-S-2.0** (see [`fpga/LICENSE`](FPGA_LICENSE.md)). It builds on a number of
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third-party components, acknowledged below as required by their licenses.
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This file is the human-readable manifest. The verbatim license texts live in the
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[`licenses/`](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/) directory (regenerate with `bash licenses/COLLECT.sh`). The frontend's
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bundled JavaScript dependencies are listed separately in
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`frontend/dist/THIRD_PARTY_LICENSES.txt`, generated at build time (`npm run licenses`).
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All licenses below are GPL-3.0-compatible.
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## Fetched at build time and statically linked into the C++ binaries
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These are downloaded by CMake (`FetchContent` / `ExternalProject`) during the first configure and
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linked into the Jungfraujoch executables.
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| Component | Version | Copyright | License (SPDX) | License text |
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|---|---|---|---|---|
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| [spdlog](https://github.com/gabime/spdlog) | 1.17.0 | Gabi Melman | MIT | [spdlog.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/spdlog.txt) |
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| [Zstandard](https://github.com/facebook/zstd) | (pinned) | Meta Platforms, Inc. | BSD-3-Clause | [zstd.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/zstd.txt) |
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| [HDF5](https://github.com/HDFGroup/hdf5) | 2.1.0 | The HDF Group; UIUC | BSD-3-Clause-style | [hdf5.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/hdf5.txt) |
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| [slsDetectorPackage](https://github.com/slsdetectorgroup/slsDetectorPackage) | 8.0.2 / 9.2.0 | PSI | LGPL-3.0-or-later | [LGPL](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/slsDetectorPackage-LGPL-3.0.txt), [GPL](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/slsDetectorPackage-GPL-3.0.txt) |
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| [cpp-httplib](https://github.com/yhirose/cpp-httplib) | 0.39.0 | Yuji Hirose | MIT | [cpp-httplib.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/cpp-httplib.txt) |
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| [libzmq (ZeroMQ)](https://github.com/zeromq/libzmq) | 4.3.5 | iMatix and contributors | MPL-2.0 | [libzmq.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/libzmq.txt) |
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| [libtiff](https://gitlab.com/libtiff/libtiff) | 4.7.1 | Sam Leffler; SGI | libtiff (BSD-like) | [libtiff.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/libtiff.txt) |
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| [FFTW](https://www.fftw.org/) | 3.3.10 | Matteo Frigo; MIT | GPL-2.0-or-later | [fftw.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/fftw.txt) |
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| [Ceres Solver](https://github.com/ceres-solver/ceres-solver) | (pinned) | Google Inc. and contributors | BSD-3-Clause | [ceres-solver.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/ceres-solver.txt) |
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| [fast-feedback-indexer](https://github.com/paulscherrerinstitute/fast-feedback-indexer) | (pinned) | PSI | BSD-3-Clause | [fast-feedback-indexer.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/fast-feedback-indexer.txt) |
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| [libjpeg-turbo](https://github.com/libjpeg-turbo/libjpeg-turbo) | (pinned) | D. R. Commander and others; IJG | IJG + BSD-3-Clause + Zlib | [libjpeg-turbo.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/libjpeg-turbo.txt) |
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| [Catch2](https://github.com/catchorg/Catch2) | 3.13.0 | Catch2 Authors | BSL-1.0 | [catch2.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/catch2.txt) |
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Catch2 is used only to build the test binary (`jfjoch_test`) and is not part of any shipped
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artifact; it is listed here for completeness.
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## Vendored directly in the repository
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These are copied into the source tree (see the path) rather than fetched.
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| Component | Path | Copyright | License (SPDX) | License text |
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|---|---|---|---|---|
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| [nlohmann/json](https://github.com/nlohmann/json) | `include/nlohmann/` | Niels Lohmann | MIT | [nlohmann-json.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/nlohmann-json.txt) |
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| [Macaron Base64](https://gist.github.com/tomykaira/f0fd86b6c73063283afe550bc5d77594) | `include/base64/` | tomykaira | MIT | [base64-macaron.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/base64-macaron.txt) |
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| [TinyCBOR](https://github.com/intel/tinycbor) | `frame_serialize/tinycbor/` | Intel Corporation | MIT | [tinycbor.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/tinycbor.txt) |
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| [Bitshuffle](https://github.com/kiyo-masui/bitshuffle) | `compression/bitshuffle/` | Kiyoshi Masui | MIT | [bitshuffle.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/bitshuffle.txt) |
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| [Bitshuffle (h-perf)](https://github.com/kalcutter/bitshuffle) | `compression/bitshuffle_hperf/` | Kal Cutter (DECTRIS) | Apache-2.0 | [bitshuffle-hperf.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/bitshuffle-hperf.txt) |
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| [LZ4](https://github.com/lz4/lz4) | `compression/lz4/` | Yann Collet | BSD-2-Clause | [lz4.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/lz4.txt) |
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| [HLS arbitrary-precision types](https://github.com/Xilinx/HLS_arbitrary_Precision_Types) | `fpga/include/` | Xilinx, Inc. | Apache-2.0 | [xilinx-hls-headers.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/xilinx-hls-headers.txt) |
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| [GEMMI](https://github.com/project-gemmi/gemmi) | `gemmi_gph/` | Global Phasing Ltd. | MPL-2.0 | [gemmi.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/gemmi.txt) |
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| [xbflash.qspi](https://github.com/Xilinx/XRT) | `tools/xbflash.qspi/` | Xilinx / AMD | Apache-2.0 | [xbflash-qspi.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/xbflash-qspi.txt) |
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| [wingetopt](https://github.com/alex85k/wingetopt) | `tools/wingetopt/` | Todd C. Miller; The NetBSD Foundation | ISC AND BSD-2-Clause | [wingetopt.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/wingetopt.txt) |
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## Runtime libraries and SDKs (shipped in binaries, not in the source tree)
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| Component | Used by | License | Notice |
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|---|---|---|---|
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| [Qt 6](https://www.qt.io/) | `jfjoch_viewer` | LGPL-3.0 | [notice](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/Qt6-NOTICE.txt), [LGPL-3.0](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/Qt6-LGPL-3.0.txt) |
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| [NVIDIA CUDA Toolkit](https://developer.nvidia.com/cuda-toolkit) (cudart, cuFFT) | CUDA builds | NVIDIA CUDA EULA | [notice](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/NVIDIA-CUDA-NOTICE.txt), [EULA](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/NVIDIA-CUDA-EULA.txt) |
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| [zlib](https://zlib.net/) | everywhere (compression) | Zlib | [zlib.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/zlib.txt) |
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| [Eigen](https://gitlab.com/libeigen/eigen) | analysis libs, Ceres, ffbidx (header-only) | MPL-2.0 (+ BSD parts) | [eigen.txt](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/eigen.txt), [README](https://gitea.psi.ch/mx/jungfraujoch/src/branch/main/licenses/eigen-README.txt) |
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## Frontend (npm) dependencies
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The React/TypeScript frontend (`frontend/`) bundles a large transitive tree of npm packages,
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overwhelmingly MIT/ISC/BSD/Apache-2.0 licensed. Their full notices are generated automatically:
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```
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cd frontend && npm run licenses # writes dist/THIRD_PARTY_LICENSES.txt
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```
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The generated file is produced as part of the `frontend` build target and installed alongside the
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served frontend, so the shipped web UI carries its own attribution.
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## Notes on weak-copyleft and attribution-sensitive components
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* **MPL-2.0** (Eigen, GEMMI, libzmq): file-level copyleft. GEMMI is vendored in `gemmi_gph/` in
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trimmed form; libzmq is fetched at build time; Eigen is provided externally (header-only). The
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corresponding source is available from each project upstream.
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* **FFTW** is GPL-2.0-or-later — compatible with, and absorbed by, this project's GPL-3.0 license.
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* **Apache-2.0** components: where upstream ships a `NOTICE` file, it is reproduced in the
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corresponding `licenses/` text.
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* **Qt (LGPL-3.0)** and **NVIDIA CUDA (EULA)** carry redistribution conditions beyond a copyright
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notice; see their dedicated notice files. The verbatim LGPL-3.0 and CUDA EULA texts are bundled
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(`licenses/Qt6-LGPL-3.0.txt`, `licenses/NVIDIA-CUDA-EULA.txt`); the CUDA EULA is the one shipped
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with CUDA Toolkit 12.8 — replace it if you build against a different toolkit version.
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