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leonarski_f 48bf9ebe3a CellEsd: PI from JFJochMath.h instead of M_PI, and the Herbstein (2000) credit at the block e.s.d.s

M_PI is not defined by MSVC without _USE_MATH_DEFINES, and CellEsd.cpp is reachable from the
viewer build. The citation, so far only in CellEsd.h, now also sits at the algorithm it credits.
The other files new in rc180 under common/, image_analysis/, reader/, writer/, rugnux/ and
viewer/ use no M_* constants or POSIX-only calls (grep of the rc180 diff).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu
(cherry picked from commit a019bc5fd2084907af9379068af3265ffe6c9ef5)

2026-10-26 15:38:58 +01:00

.gitea/workflows

CI: the documentation also pushed to the gitea-pages branch of rugnux/gitea-pages, on every push for now (token test)

2026-10-26 11:39:10 +01:00

acquisition_device

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

broker

API: rugnux_live_refinement no longer says live refinement needs a GPU

2026-10-26 15:23:07 +01:00

common

Stills: the run's rocking curve goes to _process.h5 and --mode scale merges with it; MeasureRunWidth takes the window at each reflection's resolution

2026-10-26 14:09:32 +01:00

compression

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

detector_control

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

docker

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

docs

docs: front page and quick start - Rugnux goes on to a refined structure with a model

2026-10-26 15:23:07 +01:00

etc

v1.0.0-rc.166 (#76 )

2026-09-02 21:17:31 +02:00

fpga

v1.0.0-rc.180: VERSION and update_version.sh

2026-10-24 16:57:12 +02:00

frame_serialize

v1.0.0-rc.179 (#90 )

2026-10-24 14:52:29 +02:00

frontend

API: rugnux_live_refinement no longer says live refinement needs a GPU

2026-10-26 15:23:07 +01:00

gemmi_gph

Refinement restraints: the CCP4 Monomer Library subset embedded in rugnux, read through gemmi's MonLib

2026-10-25 07:20:32 +01:00

image_analysis

CellEsd: PI from JFJochMath.h instead of M_PI, and the Herbstein (2000) credit at the block e.s.d.s

2026-10-26 15:38:58 +01:00

image_puller

v1.0.0-rc.178 (#88 )

2026-10-21 11:20:01 +02:00

image_pusher

v1.0.0-rc.178 (#88 )

2026-10-21 11:20:01 +02:00

include

v1.0.0-rc.133

2026-03-26 20:50:33 +01:00

jungfrau

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

licenses

fast-feedback-indexer vendored in image_analysis/indexing/fast-feedback-indexer instead of fetched

2026-10-25 19:58:38 +01:00

preview

v1.0.0-rc.179 (#90 )

2026-10-24 14:52:29 +02:00

reader

Stills: the run's rocking curve goes to _process.h5 and --mode scale merges with it; MeasureRunWidth takes the window at each reflection's resolution

2026-10-26 14:09:32 +01:00

receiver

Refinement cut by the run's cancel; the hero shows the refined R-work / R-free

2026-10-26 01:38:25 +01:00

rugnux

rugnux: unit-cell e.s.d.s - ZERR in a new SHELX .ins beside the .hkl, _cell.*_esd in the mmCIF, CELL_ESD_* in the report

2026-10-26 14:33:38 +01:00

tests

rugnux: unit-cell e.s.d.s - ZERR in a new SHELX .ins beside the .hkl, _cell.*_esd in the mmCIF, CELL_ESD_* in the report

2026-10-26 14:33:38 +01:00

tools

rugnux: a placed model is refined by default - giving a model is the opt-in

2026-10-26 01:38:24 +01:00

viewer

rugnux: a placed model is refined by default - giving a model is the opt-in

2026-10-26 01:38:24 +01:00

writer

Stills: the run's rocking curve goes to _process.h5 and --mode scale merges with it; MeasureRunWidth takes the window at each reflection's resolution

2026-10-26 14:09:32 +01:00

xds-plugin

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

.gitattributes

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

.gitignore

Refinement restraints: the CCP4 Monomer Library subset embedded in rugnux, read through gemmi's MonLib

2026-10-25 07:20:32 +01:00

.readthedocs.yaml

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

CLAUDE.md

fast-feedback-indexer vendored in image_analysis/indexing/fast-feedback-indexer instead of fetched

2026-10-25 19:58:38 +01:00

CMakeLists.txt

fast-feedback-indexer vendored in image_analysis/indexing/fast-feedback-indexer instead of fetched

2026-10-25 19:58:38 +01:00

CONTRIBUTING.md

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

gen_python_client.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

gitea_create_release.py

v1.0.0-rc.94

2025-10-25 22:05:47 +02:00

gitea_upload_file.py

v1.0.0-rc.156 (#66 )

2026-07-03 19:18:56 +02:00

LICENSE

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

make_doc.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

README.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

THIRD_PARTY_NOTICES.md

Refinement restraints: metal ions bound to their donors by the model's LINK records

2026-10-26 01:38:24 +01:00

update_version.sh

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

VERSION

v1.0.0-rc.180: VERSION and update_version.sh

2026-10-24 16:57:12 +02:00

README.md

Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.