leonarski_fandClaude Opus 5.5
419db6ba0e
--capture-uncertainty now reaches the stills merge: each partial carries (c (1 - p) <I>)^2 in its variance, the rotation combine's capture term per observation, in the merge weights and in the error-model samples alike. --reject-outliers on stills now uses the rotation merge's band (OutlierBand.h): exp(+-n s) about the reflection mean for the systematic part, s the weighted median |ln(I / median)| of the merge's own observations, instead of a symmetric +-n sigma band that reaches below zero when b is large (stills b 1.4-1.7). A median needs three observations. Neither is switched on for stills: measured with the run-measured partiality width before its window-truncation correction (dimple R-free, SwissFEL 4k / SACLA 243 / MicroMAX mono / MicroMAX pink): no options 0.2567 / 0.2497 / 0.3279 / 0.2477, --capture-uncertainty 1 0.2510 / 0.2470 / 0.3261 / 0.2527, --reject-outliers 6 0.2619 / 0.2487 / 0.3317 / 0.2630 - mixed, and the photon-counting pink set loses with both. Raising --min-partiality to 0.1 or 0.2 lost 0.008-0.019 on SwissFEL and mono. Defaults unchanged, so stills output is unchanged; rotation does not use MergeOnTheFly. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu
Jungfraujoch
Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with
rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular
and small-molecule - from images to merged reflections.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.