leonarski_f
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This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144. jfjoch_process: Generate a dedicated file (_process.h5), which can be used as a replacement for the _master.h5 file for a reanalyzed dataset. jfjoch_process: Improve the performance of scaling and merging, implement on the fly scaling. jfjoch_writer: All final data analysis results are repopulated in the _master.h5 file. jfjoch_scale: Dedicated tool for rescaling/merging existing data. jfjoch_viewer: Fix bugs where pixel labels where displayed on a wrong pixel. WARNING! Scaling and merging are experimental at the moment, and may not provide reasonable results for the time being. Reviewed-on: #56
40 lines
1.7 KiB
C++
40 lines
1.7 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#include "HDF5DataFilePluginImageStats.h"
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void HDF5DataFilePluginImageStats::OpenFile(HDF5File &data_file, const DataMessage &msg, size_t images_per_file) {
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max_value.reserve(images_per_file);
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min_value.reserve(images_per_file);
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error_pixels.reserve(images_per_file);
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saturated_pixels.reserve(images_per_file);
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pixel_sum.reserve(images_per_file);
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}
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void HDF5DataFilePluginImageStats::Write(const DataMessage &msg, uint64_t image_number) {
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if (msg.max_viable_pixel_value)
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max_value[image_number] = msg.max_viable_pixel_value.value();
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if (msg.min_viable_pixel_value)
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min_value[image_number] = msg.min_viable_pixel_value.value();
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if (msg.error_pixel_count)
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error_pixels[image_number] = msg.error_pixel_count.value();
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if (msg.saturated_pixel_count)
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saturated_pixels[image_number] = msg.saturated_pixel_count.value();
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if (msg.pixel_sum)
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pixel_sum[image_number] = msg.pixel_sum.value();
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}
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void HDF5DataFilePluginImageStats::WriteFinal(HDF5File &data_file) {
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HDF5Group(data_file, "/entry/image").NXClass("NXcollection");
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if (!max_value.empty())
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data_file.SaveVector("/entry/image/max_value", max_value.vec());
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if (!min_value.empty())
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data_file.SaveVector("/entry/image/min_value", min_value.vec());
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if (!error_pixels.empty())
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data_file.SaveVector("/entry/image/error_pixels", error_pixels.vec());
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if (!saturated_pixels.empty())
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data_file.SaveVector("/entry/image/saturated_pixels", saturated_pixels.vec());
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if (!pixel_sum.empty())
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data_file.SaveVector("/entry/image/pixel_sum", pixel_sum.vec());
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}
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