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leonarski_fandClaude Opus 5 3f7b4b4686 rugnux: say which lattice the first pass rejected 
"Two-pass rotation indexing found only a lattice that indexes 2/60 validation
frames" tells a user that something went wrong and nothing about what. The
commonest cause is a metric symmetry promoted one class too far: the constrained
cell then misses every reflection by the small angle the constraint snapped
away, and the run dies with no way to see that a centred supercell setting was
chosen over the primitive one it should have kept.

Print the centring, crystal system and cell that was rejected.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-06 21:17:10 +02:00
.gitea/workflows
ci: correct the tools the viewer archive is said to carry, and two dead conditions
2026-08-03 20:53:04 +02:00
acquisition_device
Address code-review findings; make detection limits detector-driven
2026-07-27 09:07:00 +02:00
broker
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
common
Ice: default the merge mask off, gate the radial background on smooth ice, and pick detection by geometry
2026-08-06 19:06:30 +02:00
compression
compression: use the NEON bitshuffle on aarch64
2026-08-03 21:27:27 +02:00
detector_control
v1.0.0-rc.157 (#67)
2026-07-11 07:19:11 +02:00
docker
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
docs
rugnux: measure the ice in the first pass, and always find its own spots
2026-08-06 20:48:22 +02:00
etc
v1.0.0-rc.115 (#22)
2025-12-04 11:56:14 +01:00
fpga
packaging: name the Debian broker package jfjoch, and let its DKMS scripts run
2026-08-03 20:51:55 +02:00
frame_serialize
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
frontend
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
gemmi_gph
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
image_analysis
Bragg integration: use the project's PI, not M_PI, in the radial kernel
2026-08-06 20:52:33 +02:00
image_puller
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
image_pusher
image_pusher: serialise tearing a connection down
2026-08-03 14:19:27 +02:00
include
v1.0.0-rc.133
2026-03-26 20:50:33 +01:00
jungfrau
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
licenses
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
lyso_test
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
preview
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
reader
Ice: default the merge mask off, gate the radial background on smooth ice, and pick detection by geometry
2026-08-06 19:06:30 +02:00
receiver
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
rugnux
rugnux: say which lattice the first pass rejected
2026-08-06 21:17:10 +02:00
tests
rugnux: measure the ice in the first pass, and always find its own spots
2026-08-06 20:48:22 +02:00
tools
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
viewer
Bragg integration: clip the background ring high side instead of trimming it
2026-08-05 18:03:11 +02:00
writer
Ice: detect it on two channels, and only handle it when it is there
2026-08-06 16:17:23 +02:00
xds-plugin
v1.0.0-rc.149 (#59)
2026-06-13 21:27:41 +02:00
.gitattributes
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
.gitignore
Add rugnux_anomalous.py: judge partiality changes by anomalous peak height
2026-08-05 22:52:39 +02:00
.readthedocs.yaml
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
CLAUDE.md
docs: do not run the whole test suite locally, and do not push
2026-08-05 16:51:56 +02:00
CMakeLists.txt
build: take the project version from the VERSION file, and read it once
2026-08-03 20:52:09 +02:00
CONTRIBUTING.md
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
gen_python_client.sh
scripts: point the generated Python client at gitea, and make the scripts runnable
2026-08-03 20:52:29 +02:00
gitea_create_release.py
v1.0.0-rc.94
2025-10-25 22:05:47 +02:00
gitea_upload_file.py
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
LICENSE
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
make_doc.sh
scripts: point the generated Python client at gitea, and make the scripts runnable
2026-08-03 20:52:29 +02:00
README.md
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
rugnux_anomalous.py
rugnux_anomalous.py: read ANODE peak labels for any scatterer, not just sulfur
2026-08-06 00:20:41 +02:00
rugnux_vs_xds.py
rugnux: fit the profile radius from the strongest spots too
2026-08-04 10:52:30 +02:00
THIRD_PARTY_NOTICES.md
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
update_version.sh
scripts: point the generated Python client at gitea, and make the scripts runnable
2026-08-03 20:52:29 +02:00
VERSION
VERSION: 1.0.0-rc.161
2026-07-28 21:58:00 +02:00

README.md

Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

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Jungfraujoch Data Acquisition System
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