A slot builder thread that throws (gemmi's topology or hydrogen placement, bad_alloc) would
call std::terminate - rugnux or the broker gone. The slot is now left out as one the card
cannot take is, with a warning, and MakeOwnSlot's GPU engine catches std::exception, not only
JFJochException. Both callers of RefineModel (after the merge, and --mode refine) catch
std::exception: the refinement is reported NOT_PERFORMED with "refinement failed: <what>" and
the run writes everything else (cell e.s.d.s, unmerged MTZ, report), as the refinement is
processing-inert.
Test: --mode refine on a cell too large for the bulk-solvent grid comes back with
REFINE= NOT_PERFORMED and the reason, not an exception.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu
(cherry picked from commit dc4e99fe4b3da2a9a3fa4290b5f70bfcc8c7bdb8)
leonarski_f
3d382ce0a0