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leonarski_fandClaude Opus 5.5 380cdf3dc7 rugnux stills with a given cell: one crystal form merged, distance and centre searched together, a stated distance kept 
- A given cell keeps only the frames whose refined cell belongs to its population (GivenCellPopulation):
  the peak of the refined-volume histogram nearest the given cell, out to the valley that separates it
  from another population, with the bin set by the data's own spread. A sample of two crystal forms
  indexed against one form's cell otherwise merges both; a run with one population keeps every frame.
- The distance grid is run from every centre hypothesis, not only the one decided at the file's
  distance, and a local grid of centres follows at the distance decided. A wrong header distance and a
  centre several pixels off (both background estimators misread it on a Rayonix set) otherwise leave
  each other flat; now the cell alone finds both.
- A distance given with --detector-distance is not searched.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-20 18:02:10 +02:00
..
crystfel
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
data
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
test_data
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
xds
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
xds_durin
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
xds_neggia
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
AcquisitionCountersTest.cpp
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
AdaptiveSpotFinderCPUTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
AdaptiveSpotFinderGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
AdaptiveThresholdTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
AndersonMixingTest.cpp
Anderson: accelerate a scaling loop only near its fixed point, and never again once its step grows (RESULT-CHANGING)
2026-10-19 18:49:24 +02:00
AnisotropyAnalysisTest.cpp
v1.0.0-rc.177 (#87)
2026-10-19 16:07:31 +02:00
AutoIncrVectorTest.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
AzimuthalIntegrationTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
BackgroundGainTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BandwidthEstimateTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BeamCenterFFTGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BeamCenterFFTTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BeamCenterFromBackgroundTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
BearerTokensTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
BraggIntegrationEngineCompressedImageTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
BraggIntegrationEngineCPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BraggIntegrationEngineGPUTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
BraggIntegrationEngineMetalTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BraggStencilTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
BrokerHttpAuthTest.cpp
broker: initialize drops the dataset's bearer tokens and everything they protected
2026-10-20 12:16:32 +02:00
BSLZ4DecoderGPUFuzzTest.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
BSLZ4DecoderGPUTest.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
CalcBraggPredictionTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
CalibrationTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
CBORTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
CCTest.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CellPopulationTest.cpp
rugnux stills with a given cell: one crystal form merged, distance and centre searched together, a stated distance kept
2026-10-20 18:02:10 +02:00
CheckImageOutput.h
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
CMakeLists.txt
rugnux stills with a given cell: one crystal form merged, distance and centre searched together, a stated distance kept
2026-10-20 18:02:10 +02:00
CoordTest.cpp
v1.0.0-rc.41
2025-06-10 18:14:04 +02:00
CorrectionSurfaceGPUTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
CrystalLatticeTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
CrystalSettingTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
CrystFELGeometryTest.cpp
tests: CrystFEL geometry parser - old-syntax fixture and a multi-panel file with path-valued clen, directions, masks and bad regions
2026-10-20 15:09:57 +02:00
CudaHandledErrorTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
CUDAMemHelpersTest.cpp
CudaFFTPlan: one cuFFT plan per card and shape, shared by its users; rigid body transforms one grid at a time
2026-10-20 01:51:28 +02:00
DectrisSimplonClientTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
DetectorGeometryTest.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
DetectorSettingsTest.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DetectorSetupTest.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
DetGeomCalibTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiagnosticOutputTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
DiffractionExperimentTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiffractionGeometryTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiffractionSpotTest.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
DirectHostReadGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
enospc_shim.c
SHIM library improvements from the HDF Group
2026-05-08 11:39:51 +02:00
FPGAFrameGeneratorTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
FPGAHLSModulesTest.cpp
v1.0.0-rc.91
2025-10-20 20:43:44 +02:00
FPGAHostWriterTest.cpp
v1.0.0-rc.34
2025-04-14 11:52:06 +02:00
FPGAIntegrationTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
FPGANetworkTest.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
FPGAPTPTest.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
FPGASpotFindingUnitTest.cpp
v.1.0.0-rc.32
2025-03-24 12:16:33 +01:00
FrameTransformationTest.cpp
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
FrenchWilsonTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
GoniometerAxisTest.cpp
v1.0.0-rc49
2025-06-18 15:19:18 +02:00
GridScanSettingsTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
HDF5WritingTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
HistogramTest.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
HKLKeyTest.cpp
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
HostMemoryTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
HotPixelFinderTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
ImageBufferTest.cpp
v1.0.0-rc.128 (#35)
2026-03-03 22:24:44 +01:00
ImageMetadataTest.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
ImagePreprocessorGPUFusedTest.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
ImageSpotFinderCPUTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
ImageSpotFinderGPUTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
IndexingUnitTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
JFCalibrationTest.cpp
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
JFConversionTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
jfjoch_hdf5_enospc_test.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
JFJochImageBufferReaderTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
JFJochReaderTest.cpp
JFJochXTCReader: unit test with a synthetic XTC stream and a one-panel DIALS .expt
2026-10-20 15:10:10 +02:00
JFJochReceiverIntegrationTest.cpp
v1.0.0-rc.150 (#60)
2026-06-15 20:24:15 +02:00
JFJochReceiverLiteTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
JFJochReceiverPlotsTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JFJochReceiverProcessingTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
JFJochStateMachineTest.cpp
broker: initialize clears the image buffer, turns live rugnux off and removes its model
2026-10-19 22:11:51 +02:00
JFPedestalTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
JPEGTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
LatticeReductionTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
LatticeSearchTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
LePageLatticeTest.cpp
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
LiveCollectionTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
LoadReferenceMtzFreeFlagsTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
LoadReferenceSfCifTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
LossyFilterTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
MergeScaleTest.cpp
Stills merge: R_split and a frame-split CC1/2, per shell and overall
2026-10-20 15:40:30 +02:00
ModelDensityGPUTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
ModelDensityMetalTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
ModelMaskGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
ModelScaleGPUTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
ModelScalingTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
ModelValidationTest.cpp
v1.0.0-rc.177 (#87)
2026-10-19 16:07:31 +02:00
ModuleSummationTest.cpp
version 1.0.0-rc.27 minor fixes
2024-12-04 20:58:51 +01:00
MolecularReplacementMetalTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
MolecularReplacementTest.cpp
Live molecular replacement: warmed up at model upload, searched beside the second pass and carried to the answer's merge
2026-10-20 07:51:07 +02:00
MovingAverageTest.cpp
v1.0.0-rc.31
2025-03-02 13:15:28 +01:00
MultiLatticeSearchTest.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
nxmx_geometry_dials_test.py
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
PairSortGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
ParallelForTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
PedestalCalcTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
PixelMaskTest.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
PortableTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
PostRefineTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
PreflightTest.cpp
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
PreviewCounterTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
RawToConvertedGeometryTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
ReceiveRingBufferTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
RegressionTest.cpp
1.0.0-rc.89
2025-10-01 22:54:40 +02:00
ReindexAmbiguityTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
ResolutionShellsTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
ResultReportTest.cpp
Rotation: a blank sweep end is trimmed before scaling, and a delta-CC1/2 stretch takes the sliver it leaves at an end (RESULT-CHANGING)
2026-10-20 02:18:19 +02:00
RfreeFlagsTest.cpp
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
RingsFromProfileTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
ROIIntegrationCPUTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIIntegrationGPUTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMapTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
RotationIndexerTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
RotationIngestGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
RotationScaleWalkTest.cpp
Rotation: a blank sweep end is trimmed before scaling, and a delta-CC1/2 stretch takes the sliver it leaves at an end (RESULT-CHANGING)
2026-10-20 02:18:19 +02:00
RugnuxLargeTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
RugnuxLiveStatusTest.cpp
broker: initialize and start clear the last collection's live rugnux status
2026-10-20 01:00:54 +02:00
RugnuxResultFilesTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
RugnuxTest.cpp
Beam-centre gates: decide on the strong-reflection count, not on how a scaling loop stopped
2026-10-19 18:49:24 +02:00
SaturationCeilingTest.cpp
rugnux stills: the saturation level read off the frames; Cheetah CXI only for a square frame
2026-10-20 16:37:25 +02:00
SearchSpaceGroupTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
SearchSpaceGroupTwinTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
ShadowFinderTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
SphericalHarmonicSurfaceTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
SpindleBlindFractionTest.cpp
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
SpindleCuspLossTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
SpotExtractorGPUParityTest.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
SpotFootprintTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
SpotTilesTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
SpotUtilsTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
StatusVectorTest.cpp
v1.0.0-rc.127 (#34)
2026-03-02 15:57:12 +01:00
StoredImageDecodeGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
StreamWriterTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
StrongPixelSetTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
SweepLayoutTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
SyntheticMergedReflections.h
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
TCPImagePusherTest.cpp
Live rugnux timing: from the puller's receive time, and from the first image
2026-10-19 19:35:54 +02:00
TestData.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ThreadSafeFIFOSetTest.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
TIFFTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
TimeTest.cpp
v1.0.0-rc.96 (#1)
2025-11-02 13:45:57 +01:00
TopPixelsTest.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
TranslationalNCSTest.cpp
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
TwinningAnalysisTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
UnitCellTest.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
WilsonOutliersTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
WriteReflectionsTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
XDSPluginTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
XtalOptimizerTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
XtalRefineCeres.h
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
XtalRefineTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
ZMQImagePusherTest.cpp
Live rugnux timing: from the puller's receive time, and from the first image
2026-10-19 19:35:54 +02:00
ZMQMetadataSocketTest.cpp
v1.0.0-rc.133
2026-03-26 20:50:33 +01:00
ZMQPreviewSocketTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
ZSTDCompressorTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00