T

leonarski_fandClaude Opus 5.5 2d118f6df1 stills merge export: French-Wilson and free-R flags on the merge's workers, output unchanged

ExportReflections ran French-Wilson single-threaded: about 1 s on the P1 search merge of a 25k-frame
stills run (180k reflections). It now uses the merge's thread count, as AssignRfreeFlags does; both
give the same result at any worker count by construction. mtz/unmerged-mtz data, hkl, cif and report
identical (--mode scale, 25k-frame XFEL run).

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

2026-10-14 12:14:25 +02:00

.gitea/workflows

CI: the validation battery is a job of Build Packages, after the unit tests

2026-10-13 16:54:44 +02:00

acquisition_device

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

broker

Broker: log why a DECTRIS run ends in a detector error, reuse one SIMPLON connection

2026-10-08 22:45:42 +02:00

common

Merge branch 'fft-admit' into rc175: FFT indexer construction waits for GPU work beside it before failing

2026-10-11 14:06:12 +02:00

compression

CBF byte-offset decoder: plain stores instead of SSE streaming stores

2026-10-13 07:54:56 +02:00

detector_control

DectrisSimplonClient: separate connections for commands and status reads

2026-10-08 22:53:01 +02:00

docker

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

docs

MR score-engine cache and merge buffers: no hang, no doubled wait; near-tie doc follows offline decide-late

2026-10-13 21:25:15 +02:00

etc

v1.0.0-rc.166 (#76 )

2026-09-02 21:17:31 +02:00

fpga

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

frame_serialize

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

frontend

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

gemmi_gph

gemmi dencalc: an atom whose density at the starting radius is exactly the cutoff gets a radius, not NaN

2026-10-13 14:28:51 +02:00

image_analysis

stills merge export: French-Wilson and free-R flags on the merge's workers, output unchanged

2026-10-14 12:14:25 +02:00

image_puller

ZeroMQ puller: the message region without a ring takes the message's read-only bytes

2026-10-13 13:17:48 +02:00

image_pusher

ZeroMQ pusher: say so when a stalled writer switches the socket to dropping

2026-10-13 12:51:34 +02:00

include

v1.0.0-rc.133

2026-03-26 20:50:33 +01:00

jungfrau

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

licenses

viewer: cpp-httplib + Mbed TLS instead of libcurl for the broker client

2026-10-07 21:16:04 +02:00

preview

Thread count from the CPUs the process may use, not the machine's

2026-10-08 11:15:29 +02:00

reader

marCCD frames are widened on the device

2026-10-12 22:37:47 +02:00

receiver

receiver: allow 30 s instead of 10 s for the image pusher to return its buffers after END

2026-10-13 19:57:15 +02:00

rugnux

RESULT-CHANGING (owner decision): stills scaling reference and tilt refinement only over the crystals the merge keeps

2026-10-14 11:32:51 +02:00

tests

RESULT-CHANGING (owner decision): stills tilt post-refinement solved directly instead of by Ceres

2026-10-14 11:59:09 +02:00

tools

battery: workstation reference is the rc175 full battery at a45135926

2026-10-13 21:17:39 +02:00

viewer

jfjoch_viewer: live updates no longer rebuild open combo boxes

2026-10-12 19:46:48 +02:00

writer

Writer: CloseOldFiles walks the open data files, not every file slot of the run

2026-10-13 12:51:34 +02:00

xds-plugin

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

.gitattributes

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

.gitignore

v1.0.0-rc.172 (#82 )

2026-09-22 06:48:37 +02:00

.readthedocs.yaml

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

CLAUDE.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

CMakeLists.txt

build: no fused multiply-add contraction in device code either

2026-10-13 07:40:28 +02:00

CONTRIBUTING.md

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

gen_python_client.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

gitea_create_release.py

v1.0.0-rc.94

2025-10-25 22:05:47 +02:00

gitea_upload_file.py

v1.0.0-rc.156 (#66 )

2026-07-03 19:18:56 +02:00

LICENSE

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

make_doc.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

README.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

rugnux_anomalous.py

v1.0.0.rc-162 (#72 )

2026-08-25 08:21:39 +02:00

rugnux_stills_ab.py

v1.0.0-rc.172 (#82 )

2026-09-22 06:48:37 +02:00

stills_datasets.tsv

v1.0.0-rc.164 (#74 )

2026-08-26 22:47:00 +02:00

THIRD_PARTY_NOTICES.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

update_version.sh

XDS plugin: GPL linking permission, own tgz with its notices, macOS build; one portable CI build

2026-10-07 20:29:19 +02:00

VERSION

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

README.md

Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.