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leonarski_fandClaude Opus 5.5 2ad4dd2e71 battery: doc_check.py cross-checks the manifests against the dataset pages

open.json against docs/EXTERNAL_TEST_DATA.md (membership both ways, space group, cell, d_min,
the stated row and repository counts, the small-molecule references), still_manifest.json
against docs/EXTERNAL_TEST_DATA_STILLS.md (membership both ways, CXIDB entry, PDB entry, space
group, d_min) and inhouse.json against the README's Arms table; exits 1 on a mismatch.
Stdlib only, no data needed. The README names it beside test_score.py and in "Adding datasets".

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu

2026-10-23 12:01:13 +02:00

.gitea/workflows

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

acquisition_device

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

broker

Anomalous difference map: ANOM/PHANOM in _maps.mtz, /rugnux/map.ccp4?type=anom, a magenta mesh in the viewer

2026-10-22 20:18:51 +02:00

common

Bragg integration: a CCD rotation sweep's sigmas at the measured gain, intensities in photons

2026-10-23 01:26:44 +02:00

compression

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

detector_control

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

docker

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

docs

docs: EXTERNAL_TEST_DATA lists every open-arm battery set, with corrected values and counts

2026-10-23 12:01:13 +02:00

etc

v1.0.0-rc.166 (#76 )

2026-09-02 21:17:31 +02:00

fpga

v1.0.0-rc.178: version bump

2026-10-20 23:00:10 +02:00

frame_serialize

writer: _model.cif from rugnux live keeps the input model's metadata, as the served model.cif does

2026-10-22 20:18:51 +02:00

frontend

Mol* viewer: in line with AareDB's StructureView at its current head (8ece2c2)

2026-10-22 20:24:42 +02:00

gemmi_gph

v1.0.0-rc.176 (#86 )

2026-10-19 07:03:28 +02:00

image_analysis

Merge ci-fix-rc178: raw/untransformed FPGA runs start again (Bragg engine edge mask in the image's layout)

2026-10-23 08:10:13 +02:00

image_puller

Live rugnux timing: from the puller's receive time, and from the first image

2026-10-19 19:35:54 +02:00

image_pusher

broker: initialize drops the dataset's bearer tokens and everything they protected

2026-10-20 12:16:32 +02:00

include

v1.0.0-rc.133

2026-03-26 20:50:33 +01:00

jungfrau

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

licenses

v1.0.0-rc.176 (#86 )

2026-10-19 07:03:28 +02:00

preview

Merge branch 'panel-s4' into panel-s5

2026-10-21 11:27:51 +02:00

reader

rugnux: the gain of a stills file that states none is read off its single-photon peak where the background resolves photons

2026-10-22 20:22:15 +02:00

receiver

Anomalous difference map: ANOM/PHANOM in _maps.mtz, /rugnux/map.ccp4?type=anom, a magenta mesh in the viewer

2026-10-22 20:18:51 +02:00

rugnux

BackgroundGain: one gain estimate for rotation and stills; the still battery no longer gives EuXFEL 152 its gain

2026-10-23 04:01:11 +02:00

tests

Merge x-polar: rc178's shadow finder, with the polarization plane read from the background where it clearly follows one

2026-10-23 07:01:03 +02:00

tools

battery: doc_check.py cross-checks the manifests against the dataset pages

2026-10-23 12:01:13 +02:00

viewer

Merge branch 'panel-s4' into panel-s5

2026-10-21 11:27:51 +02:00

writer

writer: _model.cif from rugnux live keeps the input model's metadata, as the served model.cif does

2026-10-22 20:18:51 +02:00

xds-plugin

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

.gitattributes

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

.gitignore

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

.readthedocs.yaml

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

CLAUDE.md

CLAUDE.md: the changelog is written once, just before the merge into main - condensed one-liners of what users get

2026-10-22 20:14:33 +02:00

CMakeLists.txt

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

CONTRIBUTING.md

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

gen_python_client.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

gitea_create_release.py

v1.0.0-rc.94

2025-10-25 22:05:47 +02:00

gitea_upload_file.py

v1.0.0-rc.156 (#66 )

2026-07-03 19:18:56 +02:00

LICENSE

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

make_doc.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

README.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

THIRD_PARTY_NOTICES.md

v1.0.0-rc.176 (#86 )

2026-10-19 07:03:28 +02:00

update_version.sh

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

VERSION

v1.0.0-rc.178: version bump

2026-10-20 23:00:10 +02:00

README.md

Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.