leonarski_f
75e401f0e5
Build Packages / Unit tests (push) Successful in 1h31m59s
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 8m43s
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 10m5s
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 9m27s
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 8m56s
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 9m24s
Build Packages / build:rpm (rocky9_sls9) (push) Successful in 10m27s
Build Packages / build:rpm (rocky8) (push) Successful in 9m20s
Build Packages / build:rpm (rocky9) (push) Successful in 10m50s
Build Packages / build:rpm (ubuntu2204) (push) Successful in 9m54s
Build Packages / build:rpm (ubuntu2404) (push) Successful in 8m38s
Build Packages / DIALS test (push) Successful in 12m13s
Build Packages / XDS test (durin plugin) (push) Successful in 7m8s
Build Packages / XDS test (JFJoch plugin) (push) Successful in 7m8s
Build Packages / XDS test (neggia plugin) (push) Successful in 7m50s
Build Packages / Generate python client (push) Successful in 16s
Build Packages / Build documentation (push) Successful in 50s
Build Packages / Create release (push) Skipped
This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * jfjoch_broker: Add EXPERIMENTAL pixelrefine mode for image processing * jfjoch_broker: Allow to load user mask from 8-bit and 16-bit TIFF files * jfjoch_broker: Add ROI calculation in non-FPGA workflow * jfjoch_broker: Fixes to TCP image pusher * jfjoch_broker: Remove NUMA bindings * jfjoch_broker: Improvements to indexing * jfjoch_broker: For PSI EIGER, trimming energies are taken from the detector configuration (now compulsory) instead of hardcoded values * jfjoch_writer: Save ROI definitions and the per-pixel ROI bitmap in the master file; azimuthal ROIs support phi (angular) sectors * jfjoch_viewer: Major redesign with dockable panels and saved layouts, plus on-canvas creation/move/resize of box, circle and azimuthal ROIs * jfjoch_viewer: Run jfjoch_process reprocessing jobs from inside the GUI and overlay per-run results Reviewed-on: #63
31 lines
1.5 KiB
Markdown
31 lines
1.5 KiB
Markdown
# Large reference test datasets (git-LFS)
|
|
|
|
The `[large]` Catch tests in `tests/` run the full analysis/processing pipeline over real
|
|
JUNGFRAU datasets that are too big to keep as ordinary git blobs. They are tracked with
|
|
**git-LFS** (see the `tests/data/*.h5` rule in the top-level `.gitattributes`).
|
|
|
|
These files are **not required** to build or to run the normal test suite: every test that
|
|
needs them resolves the path through `jfjoch_test::LargeDataFile()` (`tests/TestData.h`) and
|
|
`SKIP()`s when the file is absent or is still an unfetched LFS pointer. `jfjoch_test` also
|
|
prints, at start-up, whether this directory is populated.
|
|
|
|
## Fetching
|
|
|
|
```
|
|
git lfs install
|
|
git lfs pull # or: git lfs pull --include "tests/data/*.h5"
|
|
```
|
|
|
|
## Datasets
|
|
|
|
| File | Dataset | Shipped |
|
|
|----------------------------|-----------------------------------------|-----------|
|
|
| `lyso_rotation_master.h5` | lysozyme rotation series (~1800 images) | yes (LFS) |
|
|
|
|
`lyso_rotation_master.h5` (plus its `_data_NNNNNN.h5` files) is fetched by `git lfs pull` and
|
|
drives `JFJochProcess_LysoRotation`. A separate serial dataset is intentionally **not** shipped
|
|
to keep the repository small — the rotation series can be run in serial mode (full analysis
|
|
without rotation indexing) to exercise that path. To add your own dataset, drop the master + its
|
|
data files here as real files (not symlinks, if you intend to commit them via LFS); the master
|
|
references its data files by relative name, so keep them side by side.
|