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leonarski_fandClaude Opus 5 2473e03cf7 rugnux: default --spot-sigma to 4.0, the value the viewer already uses 
The two front ends disagreed on the fixed-threshold spot finder: rugnux started
from 3.0, jfjoch_viewer from the SpotFindingSettings default of 4.0, so the same
file processed either way could give different spots.

Inert on the default path - the adaptive finder derives its threshold from each
image's own per-resolution-ring noise and never reads signal_to_noise_threshold
(only ImageSpotFinderCPU/GPU and DetModuleSpotFinder do). It changes behaviour
only under --no-adaptive-spots, and there it now matches the viewer.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-03 22:07:58 +02:00
.gitea/workflows
ci: correct the tools the viewer archive is said to carry, and two dead conditions
2026-08-03 20:53:04 +02:00
acquisition_device
Address code-review findings; make detection limits detector-driven
2026-07-27 09:07:00 +02:00
broker
broker: bootstrap a concrete max_hkl, as the API and the docs already claim
2026-08-03 14:14:09 +02:00
common
build: take the project version from the VERSION file, and read it once
2026-08-03 20:52:09 +02:00
compression
compression: use the NEON bitshuffle on aarch64
2026-08-03 21:27:27 +02:00
detector_control
v1.0.0-rc.157 (#67)
2026-07-11 07:19:11 +02:00
docker
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
docs
rugnux: default --spot-sigma to 4.0, the value the viewer already uses
2026-08-03 22:07:58 +02:00
etc
v1.0.0-rc.115 (#22)
2025-12-04 11:56:14 +01:00
fpga
packaging: name the Debian broker package jfjoch, and let its DKMS scripts run
2026-08-03 20:51:55 +02:00
frame_serialize
CBOR: carry ice_ring_score in the END block
2026-07-31 14:40:17 +02:00
frontend
broker: expose adaptive spot finding over the API
2026-08-02 20:01:34 +02:00
gemmi_gph
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
image_analysis
indexing: key the shared device tables on their content, not only on an address
2026-08-03 16:33:24 +02:00
image_puller
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
image_pusher
image_pusher: serialise tearing a connection down
2026-08-03 14:19:27 +02:00
include
v1.0.0-rc.133
2026-03-26 20:50:33 +01:00
jungfrau
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
licenses
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
lyso_test
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
preview
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
reader
reader: read the frame number back with the reflections
2026-08-02 13:37:13 +02:00
receiver
receiver: stop copying every frame back from the device on the Lite path
2026-08-02 15:16:18 +02:00
rugnux
rugnux: default --spot-sigma to 4.0, the value the viewer already uses
2026-08-03 22:07:58 +02:00
tests
compression: use the NEON bitshuffle on aarch64
2026-08-03 21:27:27 +02:00
tools
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
viewer
packaging: name the Debian broker package jfjoch, and let its DKMS scripts run
2026-08-03 20:51:55 +02:00
writer
writer: take --verbose without an argument, and say what -d takes
2026-08-03 20:52:41 +02:00
xds-plugin
v1.0.0-rc.149 (#59)
2026-06-13 21:27:41 +02:00
.gitattributes
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
.gitignore
scripts: point the generated Python client at gitea, and make the scripts runnable
2026-08-03 20:52:29 +02:00
.readthedocs.yaml
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
CLAUDE.md
ci: regenerate the published API artefacts, and build Linux with LTO
2026-08-02 20:21:50 +02:00
CMakeLists.txt
build: take the project version from the VERSION file, and read it once
2026-08-03 20:52:09 +02:00
CONTRIBUTING.md
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
gen_python_client.sh
scripts: point the generated Python client at gitea, and make the scripts runnable
2026-08-03 20:52:29 +02:00
gitea_create_release.py
v1.0.0-rc.94
2025-10-25 22:05:47 +02:00
gitea_upload_file.py
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
LICENSE
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
make_doc.sh
scripts: point the generated Python client at gitea, and make the scripts runnable
2026-08-03 20:52:29 +02:00
README.md
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
rugnux_vs_xds.py
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
THIRD_PARTY_NOTICES.md
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
update_version.sh
scripts: point the generated Python client at gitea, and make the scripts runnable
2026-08-03 20:52:29 +02:00
VERSION
VERSION: 1.0.0-rc.161
2026-07-28 21:58:00 +02:00

README.md

Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

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Jungfraujoch Data Acquisition System
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