leonarski_f
4878318c27
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Further reduce startup time for DECTRIS detectors by selectively modifying SIMPLON parameters on `/start` * jfjoch_broker: Further reduce startup time for DECTRIS detectors by not setting beam center and detector distance via SIMPLON API on '/start' * jfjoch_broker: Add an extra message to ZeroMQ puller ready to monitor Lite worklow preparation time * jfjoch_broker: Image buffer configuration is postponed for Lite receiver flow till start message is received * jfjoch_broker: Use nanoseconds internally for frame/image/readout time * jfjoch_broker: Extra messages added for receiver operation (to be removed after debugging finished) * jfojch_broker: Improve profiling of different data analysis steps * jfjoch_broker: Record integration reflection count * jfjoch_broker: Fix bug where ZeroMQ preview frequency was confusing time units (micro vs. milliseconds) * jfjoch_broker: Fix bug where '/wait_till_done' got deadlocked * jfjoch_writer: Fix confusion between NaN and zero in floating-point datasets **Breaking changes**: detector definition is now using nanoseconds to define minimum frame time, minimum count time and readout time. Reviewed-on: #49
64 lines
2.9 KiB
C++
64 lines
2.9 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#include "HDF5DataFilePluginDetector.h"
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HDF5DataFilePluginDetector::HDF5DataFilePluginDetector(const StartMessage &msg) {
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integrated_format = (msg.file_format == FileWriterFormat::NXmxIntegrated);
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}
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void HDF5DataFilePluginDetector::OpenFile(HDF5File &in_data_file, const DataMessage &msg, size_t images_per_file) {
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jf_info.reserve(images_per_file);
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storage_cell.reserve(images_per_file);
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receiver_aq_dev_delay.reserve(images_per_file);
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receiver_free_buffers.reserve(images_per_file);
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efficiency.reserve(images_per_file);
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packets_received.reserve(images_per_file);
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packets_expected.reserve(images_per_file);
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pixel_sum.reserve(images_per_file);
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processing_time.reserve(images_per_file);
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}
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void HDF5DataFilePluginDetector::Write(const DataMessage &msg, uint64_t image_number) {
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if (msg.jf_info.has_value())
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jf_info[image_number] = msg.jf_info.value();
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if (msg.storage_cell.has_value())
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storage_cell[image_number] = msg.storage_cell.value();
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if (msg.receiver_aq_dev_delay.has_value())
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receiver_aq_dev_delay[image_number] = msg.receiver_aq_dev_delay.value();
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if (msg.receiver_buf_available.has_value())
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receiver_free_buffers[image_number] = msg.receiver_buf_available.value();
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if (msg.packets_received.has_value())
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packets_received[image_number] = msg.packets_received.value();
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if (msg.packets_expected.has_value())
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packets_expected[image_number] = msg.packets_expected.value();
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if (msg.pixel_sum.has_value())
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pixel_sum[image_number] = msg.pixel_sum.value();
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if (msg.image_collection_efficiency.has_value())
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efficiency[image_number] = msg.image_collection_efficiency.value();
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else
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efficiency[image_number] = 1.0;
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}
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void HDF5DataFilePluginDetector::WriteFinal(HDF5File &data_file) {
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const std::string prefix = integrated_format ? "/entry/instrument/detector/detectorSpecific" : "/entry/detector";
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if (!jf_info.empty())
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data_file.SaveVector(prefix + "/det_info", jf_info.vec());
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if (!storage_cell.empty())
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data_file.SaveVector(prefix + "/storage_cell_image", storage_cell.vec());
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if (!receiver_aq_dev_delay.empty())
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data_file.SaveVector(prefix + "/rcv_delay", receiver_aq_dev_delay.vec());
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if (!receiver_free_buffers.empty())
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data_file.SaveVector(prefix + "/rcv_free_send_buffers", receiver_free_buffers.vec());
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if (!packets_received.empty())
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data_file.SaveVector(prefix + "/packets_received", packets_received.vec());
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if (!packets_expected.empty())
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data_file.SaveVector(prefix + "/packets_expected", packets_expected.vec());
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if (!pixel_sum.empty())
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data_file.SaveVector(prefix + "/pixel_sum", pixel_sum.vec());
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data_file.SaveVector(prefix + "/data_collection_efficiency_image", efficiency.vec());
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}
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