leonarski_f
4a852b4d6b
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Add better locking for detector object - should help, when detector initialization takes too long * jfjoch_writer: Enable writing single, integrated HDF5 file with both data and metadata * XDS plugin: Add generation of Jungfraujoch plugin for XDS * CI: Add tests with XDS and DIALS (`xia2.ssx`) Reviewed-on: #43
24 lines
1.6 KiB
Markdown
24 lines
1.6 KiB
Markdown
# Integration with MX data processing software
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## XDS
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Jungfraujoch files are compatible with XDS, but there is a need of a dedicated plugin.
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First we recommend to use Jungfraujoch own XDS plugin. It is available for Linux only and can
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be downloaded from Gitea release directory (compiled on RHEL 8), it is also distributed in [`jfjoch_viewer`](JFJOCH_VIEWER.md) RPM/APT packages.
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To use the plugin, download the file `libjfjoch_xds_plugin.so.1.0.0` (three numbers at the end represent version of the plugin, and can differ later in time),
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save it to common directory (e.g., `/opt/xds`) and add the following line in the XDS.INP file:
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```
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LIB="/opt/xds/libjfjoch_xds_plugin.so.1.0.0"
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```
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We are also testing XDS with Durin and Neggia plugins, though they don't have full functionality:
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* Neggia plugin doesn't support HDF5 virtual data sets. It can be downloaded from [github.com/dectris/neggia](https://github.com/dectris/neggia/).
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* Durin has known bugs with handling non-DECTRIS files (so with virtual data sets or single format HDF5 file format).
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We recommend Durin plugin prepared by the Global Phasing consortium: [github.com/CV-GPhL/durin](https://github.com/CV-GPhL/durin), rather than original from the Diamond Light Source.
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## DIALS
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Jungfraujoch files are tested regularly with DIALS (currently v. 3.27.0) `xia2.ssx` pipeline for serial crystallography.
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There is one known limitation: files generated with NXmxLegacy format (mimicking DECTRIS filewriter1 format)
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are not handled properly with DIALS. VDS based HDF5 format (NXmxVDS) is recommended, when using DIALS.
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## CrystFEL
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Jungfraujoch files are compatible with CrystFEL. |