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leonarski_fandClaude Opus 5.5 16911a44bb Merge band-fusion (96388a389) into rc175: CPU spot finder's vertical window slide vectorises, output unchanged 
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01PXc1zD1yxHqaR1DGdCTHL4
2026-10-15 18:02:00 +02:00
.gitea/workflows
Metal Bragg integration engine on macOS, output unchanged (bit-identical to the CPU engine)
2026-10-14 23:18:42 +02:00
acquisition_device
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
broker
Broker: log why a DECTRIS run ends in a detector error, reuse one SIMPLON connection
2026-10-08 22:45:42 +02:00
common
Merge gpumem-run round 2 into rc175: FFT indexer transforms 4096 directions at a time (a third of its card memory), first-pass and pre-scan GPU workers sized from the card, single-indexer probes on a small card, beam-centre point transforms with two spectra and one work area; output unchanged
2026-10-15 17:26:32 +02:00
compression
CBF byte-offset decoder: plain stores instead of SSE streaming stores
2026-10-13 07:54:56 +02:00
detector_control
DectrisSimplonClient: separate connections for commands and status reads
2026-10-08 22:53:01 +02:00
docker
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
docs
RESULT-CHANGING: molecular replacement's transform FFT on the GPU wherever it fits the search's budget
2026-10-15 13:41:48 +02:00
etc
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
fpga
1.0.0-rc.175
2026-10-07 14:14:39 +02:00
frame_serialize
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
frontend
1.0.0-rc.175
2026-10-07 14:14:39 +02:00
gemmi_gph
gemmi dencalc: an atom whose density at the starting radius is exactly the cutoff gets a radius, not NaN
2026-10-13 14:28:51 +02:00
image_analysis
Merge band-fusion (96388a389) into rc175: CPU spot finder's vertical window slide vectorises, output unchanged
2026-10-15 18:02:00 +02:00
image_puller
ZeroMQ puller: the message region without a ring takes the message's read-only bytes
2026-10-13 13:17:48 +02:00
image_pusher
ZeroMQ pusher: say so when a stalled writer switches the socket to dropping
2026-10-13 12:51:34 +02:00
include
v1.0.0-rc.133
2026-03-26 20:50:33 +01:00
jungfrau
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
licenses
battery.py timing: a three-set benchmark placed by molecular replacement, checked and timed per step
2026-10-15 09:01:46 +02:00
preview
Thread count from the CPUs the process may use, not the machine's
2026-10-08 11:15:29 +02:00
reader
marCCD frames are widened on the device
2026-10-12 22:37:47 +02:00
receiver
receiver: allow 30 s instead of 10 s for the image pusher to return its buffers after END
2026-10-13 19:57:15 +02:00
rugnux
Merge gpumem-run round 2 into rc175: FFT indexer transforms 4096 directions at a time (a third of its card memory), first-pass and pre-scan GPU workers sized from the card, single-indexer probes on a small card, beam-centre point transforms with two spectra and one work area; output unchanged
2026-10-15 17:26:32 +02:00
tests
RESULT-CHANGING (owner approved): stills with a stationary axis get the stills geometry refinement default
2026-10-15 16:40:17 +02:00
tools
battery.py timing: a three-set benchmark placed by molecular replacement, checked and timed per step
2026-10-15 09:01:46 +02:00
viewer
Viewer: a run's results shown leave "Known unit cell" unticked too
2026-10-15 16:58:38 +02:00
writer
Writer: CloseOldFiles walks the open data files, not every file slot of the run
2026-10-13 12:51:34 +02:00
xds-plugin
XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin
2026-10-08 10:56:34 +02:00
.gitattributes
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
.gitignore
battery.py timing: a three-set benchmark placed by molecular replacement, checked and timed per step
2026-10-15 09:01:46 +02:00
.readthedocs.yaml
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
CLAUDE.md
rugnux -X FFT is the algorithm: cuFFT on a GPU, FFTW without one; -X cuFFT names the GPU implementation
2026-10-14 10:13:23 +02:00
CMakeLists.txt
Metal Bragg integration engine on macOS, output unchanged (bit-identical to the CPU engine)
2026-10-14 23:18:42 +02:00
CONTRIBUTING.md
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
gen_python_client.sh
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
gitea_create_release.py
v1.0.0-rc.94
2025-10-25 22:05:47 +02:00
gitea_upload_file.py
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
LICENSE
XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin
2026-10-08 10:56:34 +02:00
make_doc.sh
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
README.md
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
rugnux_anomalous.py
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
rugnux_stills_ab.py
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
stills_datasets.tsv
v1.0.0-rc.164 (#74)
2026-08-26 22:47:00 +02:00
THIRD_PARTY_NOTICES.md
battery.py timing: a three-set benchmark placed by molecular replacement, checked and timed per step
2026-10-15 09:01:46 +02:00
update_version.sh
XDS plugin: GPL linking permission, own tgz with its notices, macOS build; one portable CI build
2026-10-07 20:29:19 +02:00
VERSION
1.0.0-rc.175
2026-10-07 14:14:39 +02:00

README.md

Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

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Description
Jungfraujoch Data Acquisition System, Rugnux Data Processing Application, and Diffraction Viewer
Readme GPL-3.0
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