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leonarski_f 15ca4b329f broker: serve the placed model and its maps of the last rugnux live run (/rugnux/model.cif, /rugnux/map.ccp4) 
A rugnux live run that placed a model keeps it, with a copy of its map coefficients, beside the live
status (RugnuxStructure), for as long as /rugnux/status keeps the run. Made in memory on the first
request and cached, never written to disk:
- GET /rugnux/model.cif: the placed model as mmCIF, labelled as WritePlacedModel labels _model.cif
  (PlacedModelMmcif, the labelling factored out of WritePlacedModel; the file output is unchanged).
- GET /rugnux/map.ccp4?type=2fofc|fofc: the 2mFo-DFc / mFo-DFc map as a CCP4 map, FFT of the
  FWT/PHWT or DELFWT/PHDELWT coefficients (get_f_phi_on_grid + MapFromFPhi, sampled as ModelValidation
  samples), cut to the box around the model plus 5 A, with the whole cell's mean and RMS in the header.
- 404 without a placed model or maps, 400 for an unknown map type; both routes protected by the dataset
  bearer token like /rugnux/status. rugnux_live_status gets placed_model.

C++ model, python client docs, TypeScript client and redoc regenerated.

Tests: a point's coefficients give a map peaking at the atom in a cropped box; the mmCIF; the structure
is cleared at the next start; the auth test covers the new routes. End to end (myoglobin 2M replay with
an AlphaFold model): the maps equal gemmi's FFT of the written _maps.mtz to 2.5e-6 rms.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu
(cherry picked from commit 33124c3288ba112def3f51c0d91f5206886f3495)
2026-10-22 20:18:50 +02:00
..
crystfel
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
data
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
test_data
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
xds
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
xds_durin
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
xds_neggia
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
AcquisitionCountersTest.cpp
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
AdaptiveSpotFinderCPUTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
AdaptiveSpotFinderGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
AdaptiveThresholdTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
AndersonMixingTest.cpp
Anderson: accelerate a scaling loop only near its fixed point, and never again once its step grows (RESULT-CHANGING)
2026-10-19 18:49:24 +02:00
AnisotropyAnalysisTest.cpp
v1.0.0-rc.177 (#87)
2026-10-19 16:07:31 +02:00
AutoIncrVectorTest.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
AzimuthalIntegrationTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
BackgroundApertureTest.cpp
Stills: drop the lattice-spacing signal disk; the correction decision back on the plain clip
2026-10-22 10:53:31 +02:00
BackgroundGainTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BandwidthEstimateTest.cpp
Panel layout stage 2: prediction and Bragg integration through the panel table
2026-10-21 10:40:20 +02:00
BeamCenterFFTGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BeamCenterFFTTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
BeamCenterFromBackgroundTest.cpp
Dense per-pixel maps through the panel table (panel layout stage 1)
2026-10-21 10:26:30 +02:00
BearerTokensTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
BraggIntegrationEngineCompressedImageTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
BraggIntegrationEngineCPUTest.cpp
Stills keep an overload as a lower bound only where it has pixels at the limit; run-level gate removed
2026-10-22 17:27:44 +02:00
BraggIntegrationEngineGPUTest.cpp
Stills keep an overload as a lower bound only where it has pixels at the limit; run-level gate removed
2026-10-22 17:27:44 +02:00
BraggIntegrationEngineMetalTest.cpp
Metal integration test: the CPU comparison runs on a rotation experiment
2026-10-22 13:00:17 +02:00
BraggStencilTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
BrokerHttpAuthTest.cpp
broker: serve the placed model and its maps of the last rugnux live run (/rugnux/model.cif, /rugnux/map.ccp4)
2026-10-22 20:18:50 +02:00
BSLZ4DecoderGPUFuzzTest.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
BSLZ4DecoderGPUTest.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
CalcBraggPredictionTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
CalibrationTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
CBORTest.cpp
Panel id on spots and the panel table in the start message
2026-10-21 10:28:23 +02:00
CCTest.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CellPopulationTest.cpp
GivenCellPopulation: the population nearest the given cell among those holding a real share of the frames
2026-10-20 18:39:41 +02:00
CheckImageOutput.h
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
CMakeLists.txt
broker: serve the placed model and its maps of the last rugnux live run (/rugnux/model.cif, /rugnux/map.ccp4)
2026-10-22 20:18:50 +02:00
CoordTest.cpp
v1.0.0-rc.41
2025-06-10 18:14:04 +02:00
CorrectionSurfaceGPUTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
CrystalLatticeTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
CrystalSettingTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
CrystFELGeometryTest.cpp
CrystFEL geometry: read the pixel masks and bad regions instead of ignoring them
2026-10-21 12:42:08 +02:00
CudaHandledErrorTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
CUDAMemHelpersTest.cpp
CudaFFTPlan: one cuFFT plan per card and shape, shared by its users; rigid body transforms one grid at a time
2026-10-20 01:51:28 +02:00
DectrisSimplonClientTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
DetectorGeometryTest.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
DetectorModulesTest.cpp
Serial XFEL stills inputs: readers from the files themselves, module geometry and its refinement
2026-10-20 23:30:48 +02:00
DetectorSettingsTest.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DetectorSetupTest.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
DetGeomCalibTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiagnosticOutputTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
DiffractionExperimentTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiffractionGeometryTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiffractionSpotTest.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
DirectHostReadGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
enospc_shim.c
SHIM library improvements from the HDF Group
2026-05-08 11:39:51 +02:00
FPGAFrameGeneratorTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
FPGAHLSModulesTest.cpp
v1.0.0-rc.91
2025-10-20 20:43:44 +02:00
FPGAHostWriterTest.cpp
v1.0.0-rc.34
2025-04-14 11:52:06 +02:00
FPGAIntegrationTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
FPGANetworkTest.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
FPGAPTPTest.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
FPGASpotFindingUnitTest.cpp
v.1.0.0-rc.32
2025-03-24 12:16:33 +01:00
FrameTransformationTest.cpp
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
FrenchWilsonTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
GoniometerAxisTest.cpp
v1.0.0-rc49
2025-06-18 15:19:18 +02:00
GridScanSettingsTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
HDF5WritingTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
HistogramTest.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
HKLKeyTest.cpp
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
HostMemoryTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
HotPixelFinderTest.cpp
Pre-scan masks a pixel at the saturation limit on most frames, as one holding the error value
2026-10-22 17:27:43 +02:00
ImageBufferTest.cpp
v1.0.0-rc.128 (#35)
2026-03-03 22:24:44 +01:00
ImageMetadataTest.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
ImagePreprocessorGPUFusedTest.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
ImageSpotFinderCPUTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
ImageSpotFinderGPUTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
IndexingUnitTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
JFCalibrationTest.cpp
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
JFConversionTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
jfjoch_hdf5_enospc_test.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
JFJochImageBufferReaderTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
JFJochReaderTest.cpp
Panel table persisted in NXmx; modulation grid and pre-scan memo key on the plane
2026-10-21 12:44:40 +02:00
JFJochReceiverIntegrationTest.cpp
v1.0.0-rc.150 (#60)
2026-06-15 20:24:15 +02:00
JFJochReceiverLiteTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
JFJochReceiverPlotsTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JFJochReceiverProcessingTest.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
JFJochStateMachineTest.cpp
broker: initialize clears the image buffer, turns live rugnux off and removes its model
2026-10-19 22:11:51 +02:00
JFPedestalTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
JPEGTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
LatticeReductionTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
LatticeSearchTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
LePageLatticeTest.cpp
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
LiveCollectionTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
LoadReferenceMtzFreeFlagsTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
LoadReferenceSfCifTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
LossyFilterTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
MergeScaleTest.cpp
MergeOnTheFly: capture term and multiplicative outlier band for the stills merge (both opt-in)
2026-10-21 19:55:08 +02:00
ModelDensityGPUTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
ModelDensityMetalTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
ModelMaskGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
ModelScaleGPUTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
ModelScalingTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
ModelValidationTest.cpp
v1.0.0-rc.177 (#87)
2026-10-19 16:07:31 +02:00
ModuleRefinementTest.cpp
stills fixed cost: geometry refinement and pre-scan do the same work in less wall time
2026-10-21 17:48:09 +02:00
ModuleSummationTest.cpp
version 1.0.0-rc.27 minor fixes
2024-12-04 20:58:51 +01:00
MolecularReplacementMetalTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
MolecularReplacementTest.cpp
Live molecular replacement: warmed up at model upload, searched beside the second pass and carried to the answer's merge
2026-10-20 07:51:07 +02:00
MovingAverageTest.cpp
v1.0.0-rc.31
2025-03-02 13:15:28 +01:00
MultiLatticeSearchTest.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
MultiReaderTest.cpp
rugnux: several stills inputs in one run; inputs are files, never a directory
2026-10-20 23:30:17 +02:00
nxmx_geometry_dials_test.py
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
PairSortGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
PanelLayoutTest.cpp
Merge branch 'panel-s3' into panel-s5
2026-10-21 11:27:31 +02:00
ParallelForTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
PedestalCalcTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
PixelMaskTest.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
PortableTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
PostRefineTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
PreflightTest.cpp
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
PreviewCounterTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
RawToConvertedGeometryTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
ReceiveRingBufferTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
RegressionTest.cpp
1.0.0-rc.89
2025-10-01 22:54:40 +02:00
ReindexAmbiguityTest.cpp
rugnux stills: a given cell is matched in any setting, and per-image reindexing moves the lattice with the indices
2026-10-20 20:56:07 +02:00
ResolutionShellsTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
ResultReportTest.cpp
Rotation: a blank sweep end is trimmed before scaling, and a delta-CC1/2 stretch takes the sliver it leaves at an end (RESULT-CHANGING)
2026-10-20 02:18:19 +02:00
RfreeFlagsTest.cpp
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
RingsFromProfileTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
ROIIntegrationCPUTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIIntegrationGPUTest.cpp
Dense per-pixel maps through the panel table (panel layout stage 1)
2026-10-21 10:26:30 +02:00
ROIMapTest.cpp
Dense per-pixel maps through the panel table (panel layout stage 1)
2026-10-21 10:26:30 +02:00
RotationIndexerTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
RotationIngestGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
RotationScaleWalkTest.cpp
Rotation: a blank sweep end is trimmed before scaling, and a delta-CC1/2 stretch takes the sliver it leaves at an end (RESULT-CHANGING)
2026-10-20 02:18:19 +02:00
RugnuxLargeTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
RugnuxLiveStatusTest.cpp
broker: initialize and start clear the last collection's live rugnux status
2026-10-20 01:00:54 +02:00
RugnuxResultFilesTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
RugnuxStructureTest.cpp
broker: serve the placed model and its maps of the last rugnux live run (/rugnux/model.cif, /rugnux/map.ccp4)
2026-10-22 20:18:50 +02:00
RugnuxTest.cpp
Panel layout stage 2: prediction and Bragg integration through the panel table
2026-10-21 10:40:20 +02:00
SaturationCeilingTest.cpp
rugnux stills: the saturation level read off the frames; Cheetah CXI only for a square frame
2026-10-20 16:37:25 +02:00
SearchSpaceGroupTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
SearchSpaceGroupTwinTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
ShadowFinderTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
SphericalHarmonicSurfaceTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
SpindleBlindFractionTest.cpp
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
SpindleCuspLossTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
SpotExtractorGPUParityTest.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
SpotFootprintTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
SpotTilesTest.cpp
Panel layout stage 2: prediction and Bragg integration through the panel table
2026-10-21 10:40:20 +02:00
SpotUtilsTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
StatusVectorTest.cpp
v1.0.0-rc.127 (#34)
2026-03-02 15:57:12 +01:00
StoredImageDecodeGPUTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
StreamWriterTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
StrongPixelSetTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
SweepLayoutTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00
SyntheticMergedReflections.h
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
TCPImagePusherTest.cpp
Live rugnux timing: from the puller's receive time, and from the first image
2026-10-19 19:35:54 +02:00
TestData.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ThreadSafeFIFOSetTest.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
TIFFTest.cpp
Panel layout stage 5: the XFEL reader hands up the stored frame and its panel table
2026-10-21 12:44:40 +02:00
TimeTest.cpp
v1.0.0-rc.96 (#1)
2025-11-02 13:45:57 +01:00
TopPixelsTest.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
TranslationalNCSTest.cpp
v1.0.0-rc.172 (#82)
2026-09-22 06:48:37 +02:00
TwinningAnalysisTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
UnitCellTest.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
WilsonOutliersTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
WriteReflectionsTest.cpp
v1.0.0-rc.176 (#86)
2026-10-19 07:03:28 +02:00
XDSPluginTest.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
XFELReaderTest.cpp
XFEL reader: a per-frame mask is read the way the frames are, its chunk inflated outside the HDF5 lock
2026-10-22 17:45:58 +02:00
XtalOptimizerTest.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
XtalRefineCeres.h
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
XtalRefineTest.cpp
1.0.0-rc.174 (#84)
2026-10-06 14:03:18 +02:00
ZMQImagePusherTest.cpp
Live rugnux timing: from the puller's receive time, and from the first image
2026-10-19 19:35:54 +02:00
ZMQMetadataSocketTest.cpp
v1.0.0-rc.133
2026-03-26 20:50:33 +01:00
ZMQPreviewSocketTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
ZSTDCompressorTest.cpp
v1.0.0-rc.173 (#83)
2026-09-29 15:57:32 +02:00