leonarski_fandClaude Opus 4.8 0f3ccda779 rugnux: fix de-novo rotation indexing adopting a spurious axis-multiple supercell
Two-pass rotation indexing scored each first-pass scheme by how many
validation frames it indexes, but a spurious axis multiple (2x/3x...)
indexes every frame its true sub-cell does, so the count saturates - both
schemes reach the same frame total - and the tie fell to whichever scheme
ran first. When that first scheme's full-rotation FFT resolves a true
axis only as a 2x/3x harmonic of its length (the fundamental can sit far
below the harmonic in the full-360 cloud), it commits a multiplied cell
and the dataset collapses to P1, even though the other scheme already
found the true cell.

Add an integer-supercell cross-scheme tie-break: when two schemes tie on
frames but their cell volumes differ by a near-integer factor >=2, the
larger is the spurious supercell and the smaller true cell is adopted,
independent of scheme order. The near-integer test distinguishes a real
axis multiplication from a centering coincidence (a rhombohedral H cell
vs its C2 sub-cell is 1.5x and is left alone).

Validated de-novo across the rotation regression battery: the affected
dataset now indexes its correct space group, the override triggers only
where an axis was multiplied, and every other dataset is unchanged.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

S
Description
Jungfraujoch Data Acquisition System
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