leonarski_fandClaude Opus 4.8
074aca55e8
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The two-pass supercell-collapse guard re-ran the second pass with only pass-1's LATTICE forced (RotationIndexer::ForceLattice), which drops pass-1's refined per-frame orientation, rotation axis and search metadata (ForceLattice sets a stub search result and leaves updated_geom_/axis_ unset) - so the re-run integrated markedly worse than de-novo at the same geometry (measured ~3.3 lower ISa / ~1.5% higher R-meas on the affected dataset). Capture pass-1's full RotationIndexerResult and force THAT (ForceResult) in the re-run instead. The second pass then integrates at the refined geometry with pass-1's refined orientation on the correct cell, matching (slightly beating) de-novo pass-1 quality - a genuine refined-geometry two-pass result, not a fallback to the header-geometry pass. Isolation confirmed the geometry move itself and the mosaicity override were not the cause; the lattice-only force was. The guard still fires only when the second-pass cell is markedly larger than pass-1 (a spurious supercell), so all other datasets are untouched. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Jungfraujoch
Application to receive data from the PSI JUNGFRAU and EIGER detectors.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.