leonarski_fandClaude Opus 5.5 2629f3821c XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin ...

Plugin:
- Module-edge (bit 30) and chip-edge (bit 31) pixels are marked -2 (untrusted). Chip-edge pixels
  are split from a larger pixel with integer division and read low at low counts; feeding them to
  XDS as real pixels was what made the three plugins disagree in CI.
- A saturated pixel in a signed image (INTx_MAX) is passed through with its value, so XDS counts
  it as an overload; only the error marker (INTx_MIN / UINTx_MAX) becomes -1.
- Release version 1.1.0 set in CMake (library name and start message). VERSION_* in plugin.h stay
  0: XDS refuses a plugin whose info-array major version is not 0.
- Built and packaged on Linux only; the untested macOS archive is dropped.
- The XDS linking permission is removed from LICENSE; the plugin is GPL-3.0.

CI:
- XDS.INP beam centre corrected to 1091/1137 (ORGY was 7.7 px off, which put IDXREF on a knife
  edge where one plugin's run fell into a false minimum).
- Each XDS case must reach CORRECT, IDXREF spot SD must be < 2 px, and all file layouts read by
  the same plugin must give identical SPOT.XDS.

Docs: recommend Durin (PSI or Global Phasing build); mask-bit table rewritten from measurement.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>

2026-10-08 10:56:34 +02:00

..

crystfel

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

data

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

test_data

v1.0.0-rc.160 (#70)

2026-07-19 09:39:28 +02:00

xds

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

xds_durin

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

xds_neggia

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

AcquisitionCountersTest.cpp

v1.0.0-rc.36

2025-05-05 19:32:22 +02:00

AdaptiveSpotFinderCPUTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

AdaptiveSpotFinderGPUTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

AdaptiveThresholdTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

AnisotropyAnalysisTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

AutoIncrVectorTest.cpp

v1.0.0-rc.139 (#49)

2026-04-29 09:50:50 +02:00

AzimuthalIntegrationTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

BandwidthEstimateTest.cpp

Move SpotWidth to bragg_integration/, SpindleCuspLoss and LeftoverLattices to indexing/

2026-10-07 14:05:37 +02:00

BeamCenterFFTGPUTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

BeamCenterFFTTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

BeamCenterFromBackgroundTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

BearerTokensTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

BraggIntegrationEngineCompressedImageTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

BraggIntegrationEngineCPUTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

BraggIntegrationEngineGPUTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

BraggStencilTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

BrokerHttpAuthTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

BSLZ4DecoderGPUFuzzTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

BSLZ4DecoderGPUTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

CalcBraggPredictionTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

CalibrationTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

CBORTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

CCTest.cpp

v1.0.0-rc.146 (#56)

2026-05-28 18:48:35 +02:00

CheckImageOutput.h

v1.0.0-rc.36

2025-05-05 19:32:22 +02:00

CMakeLists.txt

Move the atomic-model code to image_analysis/structure_refinement/ and WriteModel to writer/

2026-10-07 14:05:37 +02:00

CoordTest.cpp

v1.0.0-rc.41

2025-06-10 18:14:04 +02:00

CorrectionSurfaceGPUTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

CrystalLatticeTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

CrystalSettingTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

CudaHandledErrorTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

CUDAMemHelpersTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

DetectorGeometryTest.cpp

v1.0.0-rc.103 (#8)

2025-11-19 09:40:50 +01:00

DetectorSettingsTest.cpp

v1.0.0-rc.139 (#49)

2026-04-29 09:50:50 +02:00

DetectorSetupTest.cpp

v1.0.0.rc-162 (#72)

2026-08-25 08:21:39 +02:00

DetGeomCalibTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

DiagnosticOutputTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

DiffractionExperimentTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

DiffractionGeometryTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

DiffractionSpotTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

enospc_shim.c

SHIM library improvements from the HDF Group

2026-05-08 11:39:51 +02:00

FPGAFrameGeneratorTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

FPGAHLSModulesTest.cpp

v1.0.0-rc.91

2025-10-20 20:43:44 +02:00

FPGAHostWriterTest.cpp

v1.0.0-rc.34

2025-04-14 11:52:06 +02:00

FPGAIntegrationTest.cpp

v1.0.0-rc.97

2025-11-09 12:42:27 +01:00

FPGANetworkTest.cpp

v1.0.0-rc.72

2025-09-08 20:28:59 +02:00

FPGAPTPTest.cpp

v1.0.0-rc.72

2025-09-08 20:28:59 +02:00

FPGASpotFindingUnitTest.cpp

v.1.0.0-rc.32

2025-03-24 12:16:33 +01:00

FrameTransformationTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

FrenchWilsonTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

GoniometerAxisTest.cpp

v1.0.0-rc49

2025-06-18 15:19:18 +02:00

GridScanSettingsTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

HDF5WritingTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

HistogramTest.cpp

v1.0.0-rc.121 (#28)

2025-12-12 21:24:20 +01:00

HKLKeyTest.cpp

v1.0.0-rc.124 (#31)

2026-02-01 13:29:33 +01:00

HotPixelFinderTest.cpp

Move the hot-pixel finder from rugnux/ to image_analysis/hot_pixels/

2026-10-07 14:05:37 +02:00

ImageBufferTest.cpp

v1.0.0-rc.128 (#35)

2026-03-03 22:24:44 +01:00

ImageMetadataTest.cpp

v1.0.0-rc.103 (#8)

2025-11-19 09:40:50 +01:00

ImagePreprocessorGPUFusedTest.cpp

v1.0.0.rc-162 (#72)

2026-08-25 08:21:39 +02:00

ImageSpotFinderCPUTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

ImageSpotFinderGPUTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

IndexingUnitTest.cpp

Indexing: a coplanar cell leaves the frame unindexed instead of throwing

2026-10-07 13:55:44 +02:00

JFCalibrationTest.cpp

v1.0.0-rc.36

2025-05-05 19:32:22 +02:00

JFConversionTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

jfjoch_hdf5_enospc_test.cpp

v1.0.0.rc-162 (#72)

2026-08-25 08:21:39 +02:00

JFJochReaderTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

JFJochReceiverIntegrationTest.cpp

v1.0.0-rc.150 (#60)

2026-06-15 20:24:15 +02:00

JFJochReceiverLiteTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

JFJochReceiverPlotsTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

JFJochReceiverProcessingTest.cpp

v1.0.0-rc.160 (#70)

2026-07-19 09:39:28 +02:00

JFJochStateMachineTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

JFPedestalTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

JPEGTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

LatticeReductionTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

LatticeSearchTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

LePageLatticeTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

LoadReferenceMtzFreeFlagsTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

LoadReferenceSfCifTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

LossyFilterTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

MergeScaleTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

ModelMaskGPUTest.cpp

Move the atomic-model code to image_analysis/structure_refinement/ and WriteModel to writer/

2026-10-07 14:05:37 +02:00

ModelScaleGPUTest.cpp

Move the atomic-model code to image_analysis/structure_refinement/ and WriteModel to writer/

2026-10-07 14:05:37 +02:00

ModelScalingTest.cpp

Move the atomic-model code to image_analysis/structure_refinement/ and WriteModel to writer/

2026-10-07 14:05:37 +02:00

ModelValidationTest.cpp

Move the atomic-model code to image_analysis/structure_refinement/ and WriteModel to writer/

2026-10-07 14:05:37 +02:00

ModuleSummationTest.cpp

version 1.0.0-rc.27 minor fixes

2024-12-04 20:58:51 +01:00

MovingAverageTest.cpp

v1.0.0-rc.31

2025-03-02 13:15:28 +01:00

MultiLatticeSearchTest.cpp

v1.0.0-rc.148 (#58)

2026-06-08 08:30:35 +02:00

nxmx_geometry_dials_test.py

v1.0.0.rc-162 (#72)

2026-08-25 08:21:39 +02:00

ParallelForTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

PedestalCalcTest.cpp

v1.0.0-rc.97

2025-11-09 12:42:27 +01:00

PixelMaskTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

PortableTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

PostRefineTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

PreflightTest.cpp

v1.0.0-rc.165 (#75)

2026-08-27 22:16:54 +02:00

PreviewCounterTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

RawToConvertedGeometryTest.cpp

v1.0.0-rc.97

2025-11-09 12:42:27 +01:00

RegressionTest.cpp

1.0.0-rc.89

2025-10-01 22:54:40 +02:00

ReindexAmbiguityTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

ResolutionShellsTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

ResultReportTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

RfreeFlagsTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

RingsFromProfileTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

ROIIntegrationCPUTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

ROIIntegrationGPUTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

ROIMapTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

RotationIndexerTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

RotationScaleWalkTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

RugnuxLargeTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

RugnuxTest.cpp

Move SpotWidth to bragg_integration/, SpindleCuspLoss and LeftoverLattices to indexing/

2026-10-07 14:05:37 +02:00

SearchSpaceGroupTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

SearchSpaceGroupTwinTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

ShadowFinderTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

SphericalHarmonicSurfaceTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

SpindleBlindFractionTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

SpindleCuspLossTest.cpp

Move SpotWidth to bragg_integration/, SpindleCuspLoss and LeftoverLattices to indexing/

2026-10-07 14:05:37 +02:00

SpotExtractorGPUParityTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

SpotFootprintTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

SpotUtilsTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

StatusVectorTest.cpp

v1.0.0-rc.127 (#34)

2026-03-02 15:57:12 +01:00

StreamWriterTest.cpp

v1.0.0-rc.97

2025-11-09 12:42:27 +01:00

StrongPixelSetTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

SweepLayoutTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

SyntheticMergedReflections.h

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

TCPImagePusherTest.cpp

v1.0.0-rc.157 (#67)

2026-07-11 07:19:11 +02:00

TestData.h

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

ThreadSafeFIFOSetTest.cpp

v1.0.0-rc.135 (#44)

2026-04-16 11:59:59 +02:00

TIFFTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

TimeTest.cpp

v1.0.0-rc.96 (#1)

2025-11-02 13:45:57 +01:00

TopPixelsTest.cpp

v1.0.0-rc.121 (#28)

2025-12-12 21:24:20 +01:00

TranslationalNCSTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

TwinningAnalysisTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

UnitCellTest.cpp

v1.0.0-rc.146 (#56)

2026-05-28 18:48:35 +02:00

WilsonOutliersTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

WriteReflectionsTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

XDSPluginTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

XtalOptimizerTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

XtalRefineCeres.h

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

XtalRefineTest.cpp

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

ZMQImagePusherTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

ZMQMetadataSocketTest.cpp

v1.0.0-rc.133

2026-03-26 20:50:33 +01:00

ZMQPreviewSocketTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

ZSTDCompressorTest.cpp

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00