leonarski_f
7f2ebd8209
* Rugnux: Rotation processing recovers most of the speed lost since 1.0.0-rc.180; live processing in jfjoch_broker finishes sooner. * Rugnux: More reliable rotation processing and indexing, including small molecules and supercells. * Rugnux: More robust serial data and model refinement; molecular replacement handles multi-chain models. * jfjoch_broker (experimental): Live serial processing keeps the detector geometry fixed for the whole run. * jfjoch_broker: Pixel sum without an FPGA, a mask bit for inactive pixels, and several stability fixes. * jfjoch_broker: Rotation indexing and quick integration moved to rugnux live mode; their API settings are deprecated and ignored. * jfjoch_broker, Rugnux: Azimuthal integration can use logarithmic (log10) Q bins or a given number of bins, set from the API, the web interface and the Rugnux command line. * jfjoch_viewer: Build and display fixes; the README is rewritten. Reviewed-on: #95 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
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Linux package repositories
For convenience, we are providing package repositories, in versions including and excluding CUDA linking.
We recommend installing the Jungfraujoch viewer from a nocuda repository (published in the slsdet8 flavour only) and the remaining packages from a cuda12/cuda13 repository.
The repository name encodes two choices: the slsDetectorPackage version the packages
were built against (slsdet8 = 8.0.2, slsdet9 = 9.2.0 — it must match the detector firmware) and
whether CUDA is linked in. What ends up inside each package, and what it needs on the target
machine, is described in Release contents.
RHEL based systems
For RHEL systems we provide the following repositories:
| RHEL version | slsDetectorPackage | CUDA | Repository file |
|---|---|---|---|
| 8.x | 8.0.2 | 12.x | https://gitea.psi.ch/api/packages/mx/rpm/centos/el8/slsdet8-cuda12.repo |
| 8.x | 9.2.0 | 12.x | https://gitea.psi.ch/api/packages/mx/rpm/centos/el8/slsdet9-cuda12.repo |
| 8.x | 8.0.2 | - | https://gitea.psi.ch/api/packages/mx/rpm/centos/el8/slsdet8-nocuda.repo |
| 9.x | 8.0.2 | 13.x | https://gitea.psi.ch/api/packages/mx/rpm/centos/el9/slsdet8-cuda13.repo |
| 9.x | 9.2.0 | 13.x | https://gitea.psi.ch/api/packages/mx/rpm/centos/el9/slsdet9-cuda13.repo |
| 9.x | 8.0.2 | - | https://gitea.psi.ch/api/packages/mx/rpm/centos/el9/slsdet8-nocuda.repo |
To install the repository, run:
dnf config-manager --add-repo https://gitea.psi.ch/api/packages/mx/rpm/centos/el8/slsdet8-cuda12.repo
RPMs are signed by the Gitea package registry as they are uploaded. If your system cannot verify the
signature, set gpgcheck=0 in the repository file or install with --nogpgcheck.
We provide the following packages in the repository:
- jfjoch — broker, web frontend, FPGA and detector command-line tools
- jfjoch-driver-dkms — PCIe kernel-module source, built by DKMS
- jfjoch-writer — HDF5 writer service
- jfjoch-viewer — desktop viewer and the XDS plugin
- Rugnux — offline analysis CLI, independent of the acquisition stack
Note that rugnux is named without the jfjoch- prefix, matching the program and the release
archive.
Ubuntu based systems
For Ubuntu systems, we also provide the following repositories:
sudo curl https://gitea.psi.ch/api/packages/mx/debian/repository.key -o /etc/apt/keyrings/gitea-mx.asc
echo "deb [signed-by=/etc/apt/keyrings/gitea-mx.asc] https://gitea.psi.ch/api/packages/mx/debian $distribution $component" | sudo tee -a /etc/apt/sources.list.d/gitea.list
sudo apt update
$distribution uses Ubuntu names jammy (22.04) and noble (24.04). $component can be set to either cuda13 or nocuda.
Only slsDetectorPackage 8.0.2 is built for Ubuntu.
The same five packages as above are provided: jfjoch, jfjoch-driver-dkms, jfjoch-writer,
jfjoch-viewer and rugnux.
Ubuntu packages currently undergo only very limited testing.