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leonarski_fandClaude Opus 5.5 ab649aad87 rugnux: _process.h5 keeps each image's XFEL pulse ID and event code 
The per-image XFEL identifiers Jungfraujoch records for a pulsed source
(/entry/xfel/pulseID, uint64, and /entry/xfel/eventCode, uint32) were not
carried through reprocessing: the reader did not read them and rugnux built
its per-image messages without them, so a _process.h5 lost the pulse ID of
every image. Merging a pump-probe run by pulse ID needs them next to the
integrated reflections.

- The HDF5 reader reads /entry/xfel/pulseID and eventCode from the master
  (VDS, integrated, _process.h5) or, for a legacy master, from its data
  files, and passes them on per image. Several inputs read as one keep them
  where every input has them.
- rugnux copies them into the messages of the image pass that writes the
  _process.h5, so /entry/xfel/{pulseID,eventCode}[i] there belongs to image
  i of the file - the index of /entry/MX/...[i], /entry/reflections/image_<i>
  and the source image /entry/detector/number[i] - including under -s/-e and
  a stride.
- A pulsed-source start message now asks for the /entry/xfel datasets in the
  VDS master: the flag was never set, so a broker master held them only in
  its data files.

Test: Rugnux_ProcessFileKeepsXfelIds (a pulsed VDS input, images 1, 4, 7 of
ten processed; IDs checked in order in the _process.h5 and on read-back).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01UqXYdL4qBGYRiSXSGXfCLu
2026-11-05 20:31:32 +01:00
..
ADUHistogram.cpp
v1.0.0-rc.153 (#63)
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ADUHistogram.h
v1.0.0-rc.153 (#63)
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AssembleToPlane.cpp
v1.0.0-rc.179 (#90)
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AssembleToPlane.h
v1.0.0-rc.179 (#90)
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AutoIncrVector.h
v1.0.0-rc.139 (#49)
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AzimuthalIntegrationMapping.cpp
v1.0.0-rc.179 (#90)
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AzimuthalIntegrationMapping.h
v1.0.0-rc.179 (#90)
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AzimuthalIntegrationProfile.cpp
v1.0.0.rc-161 (#71)
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AzimuthalIntegrationProfile.h
v1.0.0.rc-161 (#71)
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AzimuthalIntegrationSettings.cpp
v1.0.0.rc-161 (#71)
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AzimuthalIntegrationSettings.h
v1.0.0.rc-161 (#71)
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BraggIntegrationSettings.cpp
v1.0.0-rc.179 (#90)
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BraggIntegrationSettings.h
v1.0.0-rc.179 (#90)
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BrokerStatus.h
v1.0.0-rc.129 (#36)
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CheckPath.h
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CMakeLists.txt
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ColorScale.cpp
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ColorScale.h
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CompressedImage.cpp
v1.0.0-rc.40
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CompressedImage.h
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Coord.cpp
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Coord.h
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CorrelationCoefficient.cpp
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CorrelationCoefficient.h
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CrystalLattice.cpp
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CrystalLattice.h
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CudaJitCache.cpp
v1.0.0-rc.178 (#88)
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CudaJitCache.h
v1.0.0-rc.178 (#88)
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CUDAWrapper.cpp
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CUDAWrapper.cu
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CUDAWrapper.h
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DarkMaskSettings.cpp
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DarkMaskSettings.h
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DatasetSettings.cpp
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DatasetSettings.h
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2026-11-04 11:13:33 +01:00
Definitions.h
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DetectorGeometry.h
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DetectorGeometryFixed.cpp
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DetectorGeometryFixed.h
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DetectorGeometryModular.cpp
v1.0.0-rc.135 (#44)
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DetectorGeometryModular.h
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DetectorModuleGeometry.cpp
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DetectorModuleGeometry.h
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DetectorModules.cpp
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DetectorModules.h
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DetectorOrientation.cpp
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DetectorOrientation.h
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DetectorSettings.cpp
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DetectorSettings.h
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DetectorSetup.cpp
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DetectorSetup.h
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DetectorTransformation.cpp
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DetectorTransformation.h
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DiffractionExperiment.cpp
rugnux: _process.h5 keeps each image's XFEL pulse ID and event code
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DiffractionExperiment.h
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DiffractionGeometry.cpp
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DiffractionGeometry.h
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DiffractionSpot.cpp
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DiffractionSpot.h
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FFTWPlannerLock.h
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FileWriterSettings.cpp
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FileWriterSettings.h
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GitInfo.cpp.in
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GitInfo.h
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GitInfoStamp.cmake
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GoniometerAxis.cpp
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GoniometerAxis.h
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GridScanSettings.cpp
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GridScanSettings.h
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Histogram.h
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hkl_key.h
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HostMemory.cpp
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HostMemory.h
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ImageBuffer.cpp
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ImageBuffer.h
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ImageFormatSettings.cpp
v1.0.0-rc.139 (#49)
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ImageFormatSettings.h
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IndexingSettings.cpp
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IndexingSettings.h
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InstrumentMetadata.cpp
version 1.0.0-rc.27
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InstrumentMetadata.h
v1.0.0-rc.148 (#58)
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JFJochException.h
v1.0.0-rc.175 (#85)
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JFJochMath.h
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JFJochMessages.h
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JFJochReceiverPlots.cpp
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JFJochReceiverPlots.h
v1.0.0-rc.173 (#83)
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JfjochTCP.h
v1.0.0-rc.175 (#85)
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Logger.cpp
v1.0.0-rc.178 (#88)
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Logger.h
v1.0.0-rc.178 (#88)
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ModuleShift.h
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ModuleSummation.cpp
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ModuleSummation.h
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MovingAverage.cpp
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MovingAverage.h
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MtzTable.h
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MultiLinePlot.cpp
v1.0.0-rc.166 (#76)
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MultiLinePlot.h
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NetworkAddressConvert.cpp
v1.0.0-rc.153 (#63)
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NetworkAddressConvert.h
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PanelBoxes.cpp
v1.0.0-rc.179 (#90)
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PanelBoxes.h
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PanelRows.h
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2026-10-24 14:52:29 +02:00
ParallelFor.h
v1.0.0-rc.177 (#87)
2026-10-19 16:07:31 +02:00
PixelMask.cpp
Mask: pixels outside a CCD's active area, found as constant over the gain frames
2026-11-04 21:53:52 +01:00
PixelMask.h
Mask: pixels outside a CCD's active area, found as constant over the gain frames
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Plot.h
v1.0.0-rc.167 (#77)
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print_license.h
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RawToConvertedGeometry.h
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RawToConvertedGeometryCore.h
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Reflection.h
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ResolutionShells.cpp
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ResolutionShells.h
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2026-09-02 21:17:31 +02:00
ROIAzimuthal.cpp
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ROIAzimuthal.h
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ROIBox.cpp
v1.0.0-rc.153 (#63)
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ROIBox.h
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ROICircle.cpp
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ROICircle.h
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ROIDefinition.cpp
version 1.0.0-rc.29
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ROIDefinition.h
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ROIElement.cpp
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ROIElement.h
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ROIMap.cpp
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ROIMap.h
v1.0.0-rc.179 (#90)
2026-10-24 14:52:29 +02:00
ScalingSettings.cpp
v1.0.0-rc.181 (#92)
2026-11-02 12:05:20 +01:00
ScalingSettings.h
v1.0.0-rc.181 (#92)
2026-11-02 12:05:20 +01:00
ScanResult.cpp
v1.0.0-rc.44
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ScanResult.h
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
ScanResultGenerator.cpp
v1.0.0-rc.167 (#77)
2026-09-09 07:25:13 +02:00
ScanResultGenerator.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
SpotToSave.cpp
v1.0.0-rc.72
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SpotToSave.h
v1.0.0-rc.179 (#90)
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StatusVector.cpp
v1.0.0-rc.135 (#44)
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StatusVector.h
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StillsRunWidth.h
v1.0.0-rc.180 (#91)
2026-10-27 13:18:42 +01:00
TableChecksum.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
ThreadAffinity.cpp
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
ThreadAffinity.h
v1.0.0-rc.175 (#85)
2026-10-16 15:34:43 +02:00
ThreadSafeFIFO.h
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2026-09-22 06:48:37 +02:00
time_utc.h
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TopPixels.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
TopPixels.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
UnitCell.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
UnitCell.h
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2026-10-16 15:34:43 +02:00
XrayFluorescenceSpectrum.cpp
v1.0.0-rc.81
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XrayFluorescenceSpectrum.h
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2026-06-08 08:30:35 +02:00
ZeroCopyReturnValue.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
ZeroCopyReturnValue.h
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2026-06-08 08:30:35 +02:00
ZMQWrappers.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ZMQWrappers.h
v1.0.0-rc.172 (#82)
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