leonarski_fandClaude Opus 5.5
12538dcdb9
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The guard replaces the profile fit with the box sum when the two differ by more than 10 box sigmas. It exists for weak reflections where the fit runs away. On a strong spot the Gaussian profile reads a few per cent above the box (the box misses the tails), and at I/sigma above ~100 that is more than 10 sigmas, so most of the strongest reflections of bright data were being replaced with the box sum. A profile intensity above a box sum of more than 20 sigmas is now kept; the low side and weak reflections are guarded as before. On data where the guard never fired nothing changes. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01UqXYdL4qBGYRiSXSGXfCLu
Jungfraujoch
Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with
rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular
and small-molecule - from images to merged reflections.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.
How to cite
- Jungfraujoch: F. Leonarski et al., "Jungfraujoch: hardware-accelerated data-acquisition system for kilohertz pixel-array X-ray detectors" (2023), J. Synchrotron Rad. 30, 227-234 doi:10.1107/S1600577522010268; for real-time serial crystallography and live indexing feedback also J. Duan et al., "Jungfraujoch: 38 GB s⁻¹ real-time serial crystallography – data acquisition and live indexing feedback" (2026), J. Appl. Cryst. 59, 1668-1677 doi:10.1107/S1600576726008083.
- Rugnux: F. Leonarski and M. Wang, "Rugnux: from diffraction images to structure at synchrotrons and XFELs in one program" (2026), bioRxiv doi:10.64898/2026.10.24.761522.
The full list is in docs/PUBLICATIONS.md.