leonarski_fandClaude Opus 5.5 80629e11fe Acknowledgement: KAMO for the reference-sweep choice ...

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01HVeDQqrcrEZy6XBUCMZvyT

2026-11-02 09:07:01 +01:00

..

_ext

Landing page: Publications cards show the papers themselves

2026-10-31 08:43:03 +01:00

_static

docs: home page with the three programs, download pages for rugnux and the viewer, technical reference grouped below

2026-10-25 07:20:28 +01:00

images

docs: refinement's GPU engine in GPU data analysis, refinement in the pipeline figures

2026-10-26 11:15:54 +01:00

landing

Landing page: say what rugnux does with the methods it builds on

2026-11-02 08:45:47 +01:00

python_client

API: rugnux_live_refinement no longer says live refinement needs a GPU

2026-10-26 15:23:07 +01:00

ACKNOWLEDGEMENT.md

Acknowledgement: KAMO for the reference-sweep choice

2026-11-02 09:07:01 +01:00

CBOR.md

jfjoch_writer: the live refinement's model, maps and blobs are written beside the master file

2026-10-26 15:50:40 +01:00

CHANGELOG.md

CHANGELOG: 1.0.0-rc.181 entry

2026-11-02 08:35:28 +01:00

conf.py

docs: a standalone front page with the three programs and the downloads, the Sphinx tree one page below it

2026-10-25 07:20:29 +01:00

CPU_DATA_ANALYSIS_DECISIONS.md

Report the standard unweighted CC1/2; keep the weighted form internal

2026-11-01 21:46:12 +01:00

CPU_DATA_ANALYSIS_IMAGE.md

RESULT-CHANGING: rugnux: the long-axis rescue becomes a hypothesis asked of every run whose detector resolves a long axis

2026-10-28 16:10:32 +01:00

CPU_DATA_ANALYSIS_INDEXING.md

Stills without -C: leave a second crystal form out of the merge and report it

2026-11-01 22:00:29 +01:00

CPU_DATA_ANALYSIS_INTEGRATION.md

Report the standard unweighted CC1/2; keep the weighted form internal

2026-11-01 21:46:12 +01:00

CPU_DATA_ANALYSIS_REFINEMENT.md

rugnux: solvent build optional, off by default (--refine-solvent / --no-refine-solvent)

2026-11-01 22:07:04 +01:00

CPU_DATA_ANALYSIS.md

docs: technical pages caught up with the stills rocking curve, beam-shadow integration and refinement

2026-10-26 14:50:42 +01:00

DEPLOYMENT.md

docs: home page with the three programs, download pages for rugnux and the viewer, technical reference grouped below

2026-10-25 07:20:28 +01:00

DETECTOR_GEOMETRY.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

DETECTORS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

documentation.rst

Citations: Publications page, rugnux prints what to cite, writer files name Jungfraujoch

2026-10-31 08:27:34 +01:00

EXTERNAL_TEST_DATA_STILLS.md

Still battery: the float32 SwissFEL sets are dropped, their int16 copies stay

2026-10-31 14:50:19 +01:00

EXTERNAL_TEST_DATA.md

battery: 7QT9 (in-situ room-temperature wedges of twenty crystals) as a multisweep row of its own

2026-11-01 21:16:33 +01:00

FPGA_DATA_ANALYSIS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_DESIGN.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_LICENSE.md

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

FPGA_NETWORK.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_PCIE_DRIVER.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_SETTINGS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

GPU_DATA_ANALYSIS.md

Merge speed-slots into rc181

2026-10-28 03:17:45 +01:00

HARDWARE.md

v1.0.0-rc.179 (#90)

2026-10-24 14:52:29 +02:00

HDF5.md

NXmx: a detector of N modules is written as module_0..N only

2026-11-01 17:04:59 +01:00

IMAGE_STREAM.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

JFJOCH_BROKER.md

Citations: Publications page, rugnux prints what to cite, writer files name Jungfraujoch

2026-10-31 08:27:34 +01:00

JFJOCH_VIEWER.md

docs: rugnux options, model and export pages brought in line with the usage text

2026-10-26 14:50:42 +01:00

JFJOCH_WRITER.md

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

jfjoch.png

v1.0.0-rc.110 (#16)

2025-11-28 12:47:35 +01:00

JUNGFRAUJOCH.md

Citations: Publications page, rugnux prints what to cite, writer files name Jungfraujoch

2026-10-31 08:27:34 +01:00

LICENSE.md

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

NAMING.md

docs: the Rugnux card and the naming table mention refinement and live collections

2026-10-26 14:50:42 +01:00

OPENAPI_SPECS.rst

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

OPENAPI.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

PIXEL_MASK.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

PUBLICATIONS.md

Citations: Publications page, rugnux prints what to cite, writer files name Jungfraujoch

2026-10-31 08:27:34 +01:00

PYTHON_CLIENT.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

RELEASE_CONTENTS.md

v1.0.0-rc.179 (#90)

2026-10-24 14:52:29 +02:00

REPOSITORIES.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

requirements.txt

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

RUGNUX_ADVANCED.md

Merge stills-report into stills-combined: stills error model as a, b, c; no R_merge/R_meas/R_pim on stills

2026-11-01 12:59:37 +01:00

RUGNUX_BENCHMARKING.md

docs: report headline keys, model section for every way a model is given, still battery

2026-10-26 14:50:42 +01:00

RUGNUX_CALIBRATION.md

docs: rugnux getting-started pages - refinement, the full output list, a troubleshooting note

2026-10-26 14:50:42 +01:00

RUGNUX_CLI.md

Joint sweeps: a doubtful sweep's added coverage must be at least 1% of the merge's unique reflections; isomorphism rows tie-broken by index

2026-11-02 09:07:00 +01:00

RUGNUX_DOWNLOAD.md

docs: home page with the three programs, download pages for rugnux and the viewer, technical reference grouped below

2026-10-25 07:20:28 +01:00

RUGNUX_FORMATS.md

NXmx: a detector of N modules is written as module_0..N only

2026-11-01 17:04:59 +01:00

RUGNUX_INSTALL.md

docs: rugnux getting-started pages - refinement, the full output list, a troubleshooting note

2026-10-26 14:50:42 +01:00

RUGNUX_INTEGRATION.md

Stills: the error model is reported as its terms a, b, c, not as an ISa

2026-11-01 10:34:55 +01:00

RUGNUX_MODEL_AND_REFERENCE.md

rugnux report: a model that was not placed leaves every line outside MODEL VALIDATION as a run without one writes it

2026-10-31 12:23:19 +01:00

RUGNUX_OVERVIEW.md

RESULT-CHANGING: rugnux: the long-axis rescue becomes a hypothesis asked of every run whose detector resolves a long axis

2026-10-28 16:10:32 +01:00

RUGNUX_REPORT.md

Joint sweeps: a doubtful sweep's added coverage must be at least 1% of the merge's unique reflections; isomorphism rows tie-broken by index

2026-11-02 09:07:00 +01:00

RUGNUX_TUTORIAL.md

Stills: --model no longer changes the processing - its intensities are not the per-image reference

2026-10-31 22:04:39 +01:00

RUGNUX.md

rugnux: solvent build optional, off by default (--refine-solvent / --no-refine-solvent)

2026-11-01 22:07:04 +01:00

SECURITY.md

v1.0.0-rc.178 (#88)

2026-10-21 11:20:01 +02:00

SOFTWARE_INTEGRATION.md

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

SOFTWARE.md

JPEG: encode with the vendored stb_image_write instead of libjpeg-turbo

2026-11-01 13:49:11 +01:00

TECHNICAL.md

docs: refinement chapter (§15), REFINE_ report keys, acknowledgements and in-source credits

2026-10-26 11:07:43 +01:00

TESTS.md

v1.0.0-rc.178 (#88)

2026-10-21 11:20:01 +02:00

THIRD_PARTY_NOTICES.md

docs: refinement chapter (§15), REFINE_ report keys, acknowledgements and in-source credits

2026-10-26 11:07:43 +01:00

TOOLS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

VERSIONING.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

VIEWER_DOWNLOAD.md

docs: home page with the three programs, download pages for rugnux and the viewer, technical reference grouped below

2026-10-25 07:20:28 +01:00

WEB_FRONTEND.md

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00