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Jungfraujoch/common/ScalingSettings.cpp
leonarski_f fc68a9baed
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v1.0.0-rc.146 (#56)
This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144.

jfjoch_process: Generate a dedicated file (_process.h5), which can be used as a replacement for the _master.h5 file for a reanalyzed dataset.
jfjoch_process: Improve the performance of scaling and merging, implement on the fly scaling.
jfjoch_writer: All final data analysis results are repopulated in the _master.h5 file.
jfjoch_scale: Dedicated tool for rescaling/merging existing data.
jfjoch_viewer: Fix bugs where pixel labels where displayed on a wrong pixel.

WARNING! Scaling and merging are experimental at the moment, and may not provide reasonable results for the time being.

Reviewed-on: #56
2026-05-28 18:48:35 +02:00

149 lines
3.8 KiB
C++

// SPDX-FileCopyrightText: 2026 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#include "ScalingSettings.h"
ScalingSettings& ScalingSettings::SetPartialityModel(PartialityModel mode) {
partiality_mode = mode;
return *this;
}
ScalingSettings& ScalingSettings::RefineB(bool input) {
refine_b = input;
return *this;
}
ScalingSettings& ScalingSettings::MergeFriedel(bool input) {
merge_friedel = input;
return *this;
}
ScalingSettings& ScalingSettings::HighResolutionLimit_A(double limit) {
if (limit <= 0.0)
throw JFJochException(JFJochExceptionCategory::InputParameterBelowMin, "High resolution limit must be positive");
high_resolution_limit_A = limit;
return *this;
}
bool ScalingSettings::GetRefineB() const {
return refine_b;
}
bool ScalingSettings::GetMergeFriedel() const {
return merge_friedel;
}
ScalingSettings &ScalingSettings::RefineRotationWedge(bool input) {
refine_wedge = input;
return *this;
}
bool ScalingSettings::GetRefineWedge() const {
return refine_wedge;
}
std::optional<PartialityModel> ScalingSettings::GetPartialityModel() const {
return partiality_mode;
}
std::optional<double> ScalingSettings::GetHighResolutionLimit_A() const {
return high_resolution_limit_A;
}
double ScalingSettings::GetMinB() const {
return min_b;
}
double ScalingSettings::GetMaxB() const {
return max_b;
}
double ScalingSettings::GetMinMosaicity() const {
return 0.001;
}
double ScalingSettings::GetMaxMosaicity() const {
return 1.0;
}
double ScalingSettings::GetMinWedge() const {
return 0.001;
}
double ScalingSettings::GetMaxWedge() const {
return 10.0;
}
double ScalingSettings::GetDefaultMosaicity() const {
return 0.1;
}
ScalingSettings &ScalingSettings::RotationWedgeForScaling(std::optional<double> input) {
if (input) {
// TODO: Use fmt
if (input.value() < GetMinWedge() || input.value() > GetMaxWedge())
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
"Wedge for scaling must be between " + std::to_string(GetMinWedge()) +
" and " + std::to_string(GetMaxWedge()));
}
wedge_for_scaling = input;
return *this;
}
std::optional<double> ScalingSettings::GetRotationWedgeForScaling() const {
return wedge_for_scaling;
}
ScalingSettings &ScalingSettings::MinPartiality(double input) {
if (min_partiality < 0.0 || min_partiality > 1.0)
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Min partiality must be between 0 and 1");
min_partiality = input;
return *this;
}
double ScalingSettings::GetMinCCForImage() const {
return min_cc_for_image;
}
ScalingSettings &ScalingSettings::MinCCForImage(double input) {
if (input < 0.0 || input > 1.0)
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Min CC for image must be between 0 and 1");
min_cc_for_image = input;
return *this;
}
double ScalingSettings::GetMinPartiality() const {
return min_partiality;
}
ScalingSettings &ScalingSettings::FileFormat(IntensityFormat input) {
intensity_format = input;
return *this;
}
IntensityFormat ScalingSettings::GetFileFormat() const {
return intensity_format;
}
ScalingSettings &ScalingSettings::RfreeFraction(double input) {
if (input < 0.0 || input > 1.0)
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "R-free fraction must be between 0 and 1");
rfree_fraction = input;
return *this;
}
double ScalingSettings::GetRfreeFraction() const {
return rfree_fraction;
}
ScalingSettings &ScalingSettings::ScalingRegularize(bool input) {
scaling_regularize = input;
return *this;
}
bool ScalingSettings::GetScalingRegularize() const {
return scaling_regularize;
}