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This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144. jfjoch_process: Generate a dedicated file (_process.h5), which can be used as a replacement for the _master.h5 file for a reanalyzed dataset. jfjoch_process: Improve the performance of scaling and merging, implement on the fly scaling. jfjoch_writer: All final data analysis results are repopulated in the _master.h5 file. jfjoch_scale: Dedicated tool for rescaling/merging existing data. jfjoch_viewer: Fix bugs where pixel labels where displayed on a wrong pixel. WARNING! Scaling and merging are experimental at the moment, and may not provide reasonable results for the time being. Reviewed-on: #56
149 lines
3.8 KiB
C++
149 lines
3.8 KiB
C++
// SPDX-FileCopyrightText: 2026 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#include "ScalingSettings.h"
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ScalingSettings& ScalingSettings::SetPartialityModel(PartialityModel mode) {
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partiality_mode = mode;
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return *this;
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}
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ScalingSettings& ScalingSettings::RefineB(bool input) {
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refine_b = input;
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return *this;
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}
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ScalingSettings& ScalingSettings::MergeFriedel(bool input) {
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merge_friedel = input;
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return *this;
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}
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ScalingSettings& ScalingSettings::HighResolutionLimit_A(double limit) {
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if (limit <= 0.0)
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throw JFJochException(JFJochExceptionCategory::InputParameterBelowMin, "High resolution limit must be positive");
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high_resolution_limit_A = limit;
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return *this;
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}
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bool ScalingSettings::GetRefineB() const {
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return refine_b;
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}
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bool ScalingSettings::GetMergeFriedel() const {
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return merge_friedel;
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}
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ScalingSettings &ScalingSettings::RefineRotationWedge(bool input) {
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refine_wedge = input;
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return *this;
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}
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bool ScalingSettings::GetRefineWedge() const {
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return refine_wedge;
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}
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std::optional<PartialityModel> ScalingSettings::GetPartialityModel() const {
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return partiality_mode;
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}
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std::optional<double> ScalingSettings::GetHighResolutionLimit_A() const {
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return high_resolution_limit_A;
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}
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double ScalingSettings::GetMinB() const {
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return min_b;
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}
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double ScalingSettings::GetMaxB() const {
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return max_b;
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}
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double ScalingSettings::GetMinMosaicity() const {
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return 0.001;
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}
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double ScalingSettings::GetMaxMosaicity() const {
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return 1.0;
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}
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double ScalingSettings::GetMinWedge() const {
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return 0.001;
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}
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double ScalingSettings::GetMaxWedge() const {
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return 10.0;
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}
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double ScalingSettings::GetDefaultMosaicity() const {
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return 0.1;
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}
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ScalingSettings &ScalingSettings::RotationWedgeForScaling(std::optional<double> input) {
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if (input) {
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// TODO: Use fmt
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if (input.value() < GetMinWedge() || input.value() > GetMaxWedge())
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Wedge for scaling must be between " + std::to_string(GetMinWedge()) +
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" and " + std::to_string(GetMaxWedge()));
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}
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wedge_for_scaling = input;
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return *this;
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}
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std::optional<double> ScalingSettings::GetRotationWedgeForScaling() const {
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return wedge_for_scaling;
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}
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ScalingSettings &ScalingSettings::MinPartiality(double input) {
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if (min_partiality < 0.0 || min_partiality > 1.0)
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Min partiality must be between 0 and 1");
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min_partiality = input;
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return *this;
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}
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double ScalingSettings::GetMinCCForImage() const {
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return min_cc_for_image;
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}
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ScalingSettings &ScalingSettings::MinCCForImage(double input) {
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if (input < 0.0 || input > 1.0)
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Min CC for image must be between 0 and 1");
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min_cc_for_image = input;
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return *this;
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}
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double ScalingSettings::GetMinPartiality() const {
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return min_partiality;
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}
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ScalingSettings &ScalingSettings::FileFormat(IntensityFormat input) {
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intensity_format = input;
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return *this;
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}
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IntensityFormat ScalingSettings::GetFileFormat() const {
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return intensity_format;
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}
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ScalingSettings &ScalingSettings::RfreeFraction(double input) {
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if (input < 0.0 || input > 1.0)
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "R-free fraction must be between 0 and 1");
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rfree_fraction = input;
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return *this;
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}
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double ScalingSettings::GetRfreeFraction() const {
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return rfree_fraction;
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}
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ScalingSettings &ScalingSettings::ScalingRegularize(bool input) {
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scaling_regularize = input;
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return *this;
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}
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bool ScalingSettings::GetScalingRegularize() const {
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return scaling_regularize;
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} |