rugnux gained --model - R-free and 2Fo-Fc/Fo-Fc maps against an atomic model, and with it
the resolution of the enantiomorph and of a merohedral indexing ambiguity - without the
page ever mentioning it. It was the only option missing; the two lists now agree in both
directions, checked against the usage the binary prints.
The viewer page still said results are never saved and that no Windows package exists.
Both have been false for a while: the Processing panel runs full rugnux jobs on the open
dataset, writes _process.h5 and the merged reflections, registers each run as a
selectable view so runs can be compared, and can hand out the equivalent command line for
a cluster; and the installer is published with every release. The mask menu also loads
TIFFs now, and the View menu has layout presets.
The writer page documented -R for the root directory, which is the back-compatibility
alias for -d, and an HTTP status interface that no longer exists - status reaches the
broker over the writer notification socket, and a writer is stopped with a signal.
The test page pointed at .gitlab-ci.yml and at jfjoch_offline_process, which is not a
binary any more; the CrystFEL fixture pointed at HDF5DatasetWriteTest, which is not
either. The broker page linked ../broker/redoc-static.html, which MyST resolved by
copying the 700 kB file into _downloads/ rather than using the copy already in _static.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
leonarski_fandClaude Opus 5