Datasets may be confidential; sample names and measured unit cells committed to
the repo can leak outside the group working on them. Scrub existing occurrences
and add a "No sample identities in the repository" section to CLAUDE.md
(forbidden: sample/dataset names, internal codes, measured cells tied to a
sample; fine: space group / lattice / twinning descriptors).
- Comments: replace internal dataset codes and protein names with the
crystallographic situation they illustrate (centred vs pseudo-symmetric,
holohedral, cubic, F-cubic/hexagonal, ...).
- Docs: same, in the analysis/writer/stream references and example configs.
- Tests: rename sample-named identifiers, TEST_CASE names, file prefixes and
asserted labels to neutral crystallographic names (e.g. tetragonal_uc);
behaviour unchanged. Reduce the CrystFEL reference PDB to a bare CRYST1 cell
file (cell.pdb) and rename the reference data file.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
leonarski_fandClaude Opus 4.8