e7edee6b2ed5bc6a384eea421ced4dc28e911087
5
Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
  leonarski_fandClaude Opus 4.8
|
100fe7b7e7 |
PixelRefine: make factored Terms 1+2 the model, remove old wiring
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 25m0s
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 26m42s
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 27m7s
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 28m25s
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 29m44s
Build Packages / build:rpm (rocky9_sls9) (push) Successful in 32m14s
Build Packages / build:rpm (rocky8) (push) Successful in 24m39s
Build Packages / build:rpm (ubuntu2404) (push) Successful in 23m52s
Build Packages / build:rpm (ubuntu2204) (push) Successful in 25m19s
Build Packages / Generate python client (push) Successful in 23s
Build Packages / XDS test (durin plugin) (push) Successful in 20m42s
Build Packages / Create release (push) Skipped
Build Packages / build:rpm (rocky9) (push) Successful in 27m2s
Build Packages / Build documentation (push) Successful in 1m23s
Build Packages / DIALS test (push) Successful in 31m5s
Build Packages / XDS test (JFJoch plugin) (push) Successful in 14m55s
Build Packages / XDS test (neggia plugin) (push) Successful in 13m7s
Build Packages / Unit tests (push) Successful in 2h14m40s
PixelRefine is now an intensity-only operation: geometry is fixed (refined upstream by XtalOptimizer) and the only objective is the factored per-reflection likelihood (FACTORED_MODEL.md Terms 1+2) - measured per-resolution profile width R1 plus one Fisher-weighted intensity/scaling residual per reflection, fitting the per-image scale G and B. Validated on crystal 2 (fixed_master.h5 as stills, 1.7 A): CC1/2 84-92%, CCref 77-92%, flat - reproduces the env-flag prototype and matches the rotation path from the stills path. Removed: - the per-pixel ShoeboxResidual loss and PixelResidual cost functor; - all in-PixelRefine geometry refinement (orientation/cell/beam/distance/R), the regularised-orientation LSQ, signal-weighting, and the global sweep; - Term 3 (per-spot recentring) - a confirmed no-op on both crystals; - the diagnostic scaffolding (covariance, centroid, adaptive_R1) and the PR_* env knobs + stderr dumps in IndexAndRefine; - the PredictImage/ChiSquaredImage renderers and the entire viewer PixelRefine window/table/params + worker bindings + shoebox overlay. The sweep box-integrator background median became mean (consistency) by virtue of removing the sweep. METHODS.md rewritten for the current model; findings recorded in FINDINGS-2026-06.md. Net -2200 lines. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> |
||
|
leonarski_f
|
efe882f4b6 |
jfjoch_viewer: Better display (to be tested) of pixel refine
Build Packages / Unit tests (push) Failing after 1s
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 25m52s
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 29m5s
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 29m54s
Build Packages / build:rpm (rocky8) (push) Successful in 31m55s
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 32m12s
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 32m48s
Build Packages / build:rpm (rocky9_sls9) (push) Successful in 35m27s
Build Packages / Generate python client (push) Successful in 25s
Build Packages / build:rpm (rocky9) (push) Successful in 31m59s
Build Packages / Create release (push) Skipped
Build Packages / Build documentation (push) Successful in 1m36s
Build Packages / build:rpm (ubuntu2204) (push) Successful in 24m8s
Build Packages / XDS test (neggia plugin) (push) Successful in 17m46s
Build Packages / build:rpm (ubuntu2404) (push) Successful in 21m36s
Build Packages / XDS test (durin plugin) (push) Successful in 19m40s
Build Packages / XDS test (JFJoch plugin) (push) Successful in 19m38s
Build Packages / DIALS test (push) Successful in 26m30s
|
||
|
leonarski_f
|
2d202f1d44 |
jfjoch_viewer: fixes to pixel refine window
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 10m7s
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 10m54s
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 11m14s
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 11m54s
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 12m15s
Build Packages / build:rpm (rocky9_sls9) (push) Successful in 13m25s
Build Packages / build:rpm (rocky8) (push) Successful in 10m16s
Build Packages / build:rpm (ubuntu2204) (push) Successful in 10m4s
Build Packages / XDS test (durin plugin) (push) Successful in 8m48s
Build Packages / build:rpm (rocky9) (push) Successful in 11m55s
Build Packages / Generate python client (push) Successful in 28s
Build Packages / Create release (push) Skipped
Build Packages / build:rpm (ubuntu2404) (push) Successful in 10m56s
Build Packages / Build documentation (push) Successful in 1m36s
Build Packages / DIALS test (push) Successful in 14m29s
Build Packages / XDS test (neggia plugin) (push) Successful in 13m39s
Build Packages / XDS test (JFJoch plugin) (push) Successful in 15m6s
Build Packages / Unit tests (push) Successful in 2h57m56s
|
||
|
leonarski_f
|
bb9f5c715f |
v1.0.0-rc.135 (#44)
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 9m55s
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 10m28s
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 8m56s
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 11m47s
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 13m7s
Build Packages / build:rpm (ubuntu2204) (push) Successful in 12m31s
Build Packages / build:rpm (rocky8) (push) Successful in 12m59s
Build Packages / build:rpm (rocky9) (push) Successful in 14m5s
Build Packages / build:rpm (rocky9_sls9) (push) Successful in 15m30s
Build Packages / Generate python client (push) Successful in 1m18s
Build Packages / Build documentation (push) Successful in 1m3s
Build Packages / Create release (push) Has been skipped
Build Packages / build:rpm (ubuntu2404) (push) Successful in 10m8s
Build Packages / XDS test (durin plugin) (push) Successful in 9m16s
Build Packages / XDS test (neggia plugin) (push) Successful in 7m59s
Build Packages / XDS test (JFJoch plugin) (push) Successful in 9m12s
Build Packages / DIALS test (push) Successful in 11m44s
Build Packages / Unit tests (push) Successful in 1h23m8s
This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * Multiple small bug fixes scattered across the whole code base. (detected with GPT-5.4) * jfjoch_viewer: Improve image render performance Reviewed-on: #44 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> |
||
|
leonarski_f
|
95acf3aba3 |
v1.0.0-rc.104 (#9)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 9m17s
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 10m9s
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 7m29s
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 8m52s
Build Packages / Generate python client (push) Successful in 25s
Build Packages / Build documentation (push) Successful in 49s
Build Packages / Create release (push) Has been skipped
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 8m47s
Build Packages / build:rpm (rocky8) (push) Successful in 8m49s
Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m4s
Build Packages / build:rpm (rocky9) (push) Successful in 8m52s
Build Packages / build:rpm (ubuntu2204) (push) Successful in 8m11s
Build Packages / Unit tests (push) Successful in 1h14m42s
This is an UNSTABLE release. jfjoch_writer: Fix and improve the way grid scan geometry is saved (non-NXmx extension makes it way easier) jfjoch_viewer: Display grid scan results in 2D (work in progress) jfjoch_viewer: Improve auto-scaling on start of images (work in progress) jfjoch_viewer: Add B-factor and resolution estimate to the dataset info plots Reviewed-on: #9 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> |