Jungfraujoch

Author	SHA1	Message	Date
leonarski_fandClaude Opus 4.8	4697f10555	process: extract reprocessing workflow into shared JFJochProcess library The full processing workflow no longer lives in the CLIs. New process/JFJochProcess encapsulates it for jfjoch_process, jfjoch_azint and (later) the viewer: - ProcessMode {AzimuthalIntegration, FullAnalysis}; ProcessConfig carries run control (range, threads, output prefix, spot finding, rotation + scaling options, reference data) while the DiffractionExperiment carries all algorithm settings. - Run() executes setup -> optional two-pass rotation pre-pass -> parallel per-image loop (std::thread) -> optional scaling/merging post-pass -> NXmxIntegrated _process.h5 that links back to the original images. ProcessResult returns stats + merge text. - Cancel() / std::atomic<bool> (receiver style), checked between images; the CLIs install a SIGINT handler that calls it (fixes the previous Ctrl+C gap), the viewer will use the same hook. JFJochProcessObserver streams progress / per-image results for a live GUI. jfjoch_process.cpp and jfjoch_azint.cpp are now thin: argument parsing + experiment configuration, then JFJochProcess::Run + stats printing. Behaviour and usage messages are unchanged. Adds JFJochProcessTest (azimuthal integration round-trip, no-output run, pre-cancel) over a small generated dataset. Verified: tests/jfjoch_test [HDF5] (83 cases / 1854 assertions); jfjoch_azint and jfjoch_process run end-to-end on lyso_test (azint 20 images; full analysis recovers the lysozyme cell at 25% indexing). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-21 10:36:18 +02:00
leonarski_f	e6c6536e3a	JFJochReceiverPlots: Move to common/, so it can be linked without bringing JFJochReceiver HW dependencies	2026-06-20 16:26:11 +02:00
leonarski_f	c49bd2ac3b	v1.0.0-rc.152 (#62 ) Build Packages / XDS test (neggia plugin) (push) Successful in 6m2s Details Build Packages / Unit tests (push) Successful in 1h37m1s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 12m4s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 13m30s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 12m52s Details Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 11m53s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 12m38s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 13m30s Details Build Packages / build:rpm (rocky8) (push) Successful in 10m47s Details Build Packages / build:rpm (rocky9) (push) Successful in 11m48s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 10m40s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 9m44s Details Build Packages / DIALS test (push) Successful in 12m59s Details Build Packages / XDS test (durin plugin) (push) Successful in 8m33s Details Build Packages / Generate python client (push) Successful in 16s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 6m24s Details Build Packages / Build documentation (push) Successful in 57s Details Build Packages / Create release (push) Skipped Details * jfjoch_broker: Fix bounds for azimuthal integration for Q spacing (allow Q of 1e-5) * jfjoch_viewer: Adjust Q bounds for azimuthal integration * jfjoch_azint: Add tool to do quick azimuthal integration Reviewed-on: #62	2026-06-17 20:36:24 +02:00
leonarski_f	ddf4c75645	v1.0.0-rc.31	2025-03-02 13:15:28 +01:00
leonarski_f	71290f374a	version 1.0.0-rc.27	2024-12-02 21:17:14 +01:00
leonarski_f	b3e745a8dd	version 1.0.0-rc.26	2024-11-26 16:04:38 +01:00