leonarski_f and Claude Opus 4.8
e6a50b45c7
Integration: mean background + global error model (trustworthy sigmas)
...
Background estimate: use the mean of the local ring, not the median. For a
right-skewed (Poisson) background the median sits below the mean, so subtracting
it under-subtracts and biases every weak intensity positive; over multiplicity
this becomes fake <I/sig> of a few in no-signal high-resolution shells. Fixed in
both PixelRefine and BraggIntegrate2D (the classical route had the same bug).
<I/sig> now tracks CC honestly and the true resolution limit is visible.
Error model: fit a global a, b (XDS form sigma'^2 = a*sigma^2 + (b*I)^2) from the
scatter of symmetry equivalents at the merge level (so both integrators benefit),
and print it with ISa = 1/b in jfjoch_process. The (b*I)^2 term uses the
reflection mean (not the per-observation I_i, which biases the weights and
collapses CC); a,b come from a relative-weighted bin regression. Replaces the
earlier per-resolution-shell variant, which was partly masking the background bias.
METHODS.md: document both (Sections 6-7), integrator-agnostic.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com >
2026-06-12 18:39:32 +02:00
leonarski_f
db68c8dc38
PixelRefine: Results seem to be much better
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2026-06-12 17:28:18 +02:00
leonarski_f
47dc19dd03
PixelRefine: Improvements to accept more reasonable count of reflections
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2026-06-12 10:12:23 +02:00
leonarski_f
d31063ca3f
PixelRefine: Some improvements
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2026-06-11 21:25:05 +02:00
leonarski_f
bd5fef7f61
PixelRefine: Simplify (remove Lorentz correction, remove background from azimuthal integration)
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2026-06-10 18:37:46 +02:00
leonarski_f
efe882f4b6
jfjoch_viewer: Better display (to be tested) of pixel refine
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2026-06-09 16:28:17 +02:00
leonarski_f
6c85aaba2b
BraggPrediction: Include X-ray bandwidth
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2026-06-09 15:01:44 +02:00
leonarski_f
e4b66f9cd9
PIxelRefine: Another iteration
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2026-06-09 08:04:27 +02:00
leonarski_f
e8a9b1840d
PixelRefine: Make it faster by doing one cell calculation per shoe-box
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2026-06-08 22:45:22 +02:00
leonarski_f
05711a1077
jfjoch_viewer: Add pixel refinw and magnifier windows (to be tested)
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2026-06-08 21:22:19 +02:00
leonarski_f
698a98be35
PixelRefine: Claude fixed my bugs
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2026-06-08 20:06:53 +02:00
leonarski_f
155c53acd8
jfjoch_process: First pixel refine integration
2026-06-08 15:37:27 +02:00
leonarski_f
6f31159607
PixelRefine: Add bandwidth contribution
2026-06-08 13:59:01 +02:00
leonarski_f
6f6098d508
PixelRefine: Work in progress (Claude)
2026-06-08 13:44:39 +02:00
leonarski_f
66a48c4266
PixelRefine: Work in progress (Claude)
2026-06-08 12:43:10 +02:00
leonarski_f
9a991b6614
PixelRefine: Work in progress
2026-06-08 11:59:48 +02:00
leonarski_f
50f953bcc5
PixelRefine: Work in progress
2026-06-08 09:41:58 +02:00
leonarski_fandClaude Opus 4.8