Every input is a file named on the command line, read in the order given (a shell glob gives them
sorted by name); a directory is refused with the glob form to use instead.
- Several Jungfraujoch/NXmx masters of stills are read as one run (JFJochMultiReader): their images
one after another, the pixel masks combined, the per-image efficiency placed at each input's
images. They must share the detector, wavelength (0.1%), distance (0.1 mm) and beam centre (1 px),
since stills geometry refinement refines one geometry for all frames; rotation sweeps are refused.
The log gives the indexing rate of each input beside the run's (ProcessResult::image_indexed).
- SACLA HDF5 / CXI (JFJochCrystFELReader::ReadFiles, ReadCXI, Open) and XTC
(JFJochXTCReader::ReadFiles) take the list of files instead of scanning a directory;
CanReadCXI and xtc::CanRead accept only a file; ListFiles and xtc::CollectStreams are gone.
- Several inputs must be one format, --mode mx, and stored files (no broker, no --simulate-live);
one frame of a CBF/marCCD/SMV sweep still names the whole sweep.
Validated: two Jungfraujoch lysozyme stills runs together (49,920 frames, known cell) 57.1% indexed (59.3% /
54.9% per run), 1.22 A, CC1/2 0.986, R_split 8.8%, REFMAC R/R-free 0.253/0.269 against 0.257/0.273
for the earlier hand-built combined master. Rotation: 5reo and lyso_x10sa_90deg_1 unchanged.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu
