11 Commits

Include renames

Author	SHA1	Message	Date
leonarski_fandClaude Opus 5	77c6d0f4ec	Report the stored image depth in bit_depth_readout, and write underload_value ... NXmx has no field for the depth of the stored image - only bit_depth_readout, "how many bits the electronics record per pixel". The two diverge exactly when summation is used: the readout keeps the detector's native width while the summed image must be wider to hold the sum. Every NXmx reader nonetheless takes bit_depth_readout as the width of the stored pixel. dxtbx ignores the non-standard bit_depth_image entirely for a generic NXmx file, derives its masking markers from bit_depth_readout, and raises "Unsupported integer dtype uint32" for a 32-bit image when the field is absent. Reporting the electronic value there would mislead precisely where it differs. So report the image depth in both fields, and drop the machinery that existed to carry the electronic one for a DECTRIS detector: the SIMPLON read, the DetectorSetup setter, and the receiver-side propagation of a key that the DECTRIS stream2 protocol does not even define. JUNGFRAU and PSI EIGER keep their readout depth, which the FPGA acquisition genuinely needs. Also write NXmx underload_value, the lowest valid value. Without it a reader takes the trusted minimum to be -0x7FFFFFFF, so the error-pixel marker sits inside the trusted range and is consumed as an intensity. Measured with DIALS 3.27 on a written file: trusted_range goes from (-2147483647, 32766) to (-32767, 32766), so the INT16_MIN gap pixels are now masked. Third fix in the same area: JFJochReceiverLite::Configure took the image width from the incoming stream but not the sign, while the image itself is forwarded byte-for-byte. A detector sending int32 was re-declared uint32, and the VDS master was typed unsigned over signed data files. Take pixel_signed from the stream too - it and the width are both carried by the one image_dtype key. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>	2026-08-22 18:15:44 +02:00
leonarski_f	d760b12a18	v1.0.0-rc.141 (#51) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Azimuthal integration mapping is generated with parallel computations, significantly reducing setup times * frontend: Fix selection of FFTW in indexing settings Reviewed-on: #51 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>	2026-04-30 13:04:54 +02:00
leonarski_f	239a441ee6	v1.0.0-rc.140 (#50) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: For DECTRIS detectors, ZeroMQ link is persistent, to save time for establishing new connection * jfjoch_broker: Minor bug fixes for rare conditions Reviewed-on: #50	2026-04-29 21:40:22 +02:00
leonarski_f	4878318c27	v1.0.0-rc.139 (#49) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Further reduce startup time for DECTRIS detectors by selectively modifying SIMPLON parameters on `/start` * jfjoch_broker: Further reduce startup time for DECTRIS detectors by not setting beam center and detector distance via SIMPLON API on '/start' * jfjoch_broker: Add an extra message to ZeroMQ puller ready to monitor Lite worklow preparation time * jfjoch_broker: Image buffer configuration is postponed for Lite receiver flow till start message is received * jfjoch_broker: Use nanoseconds internally for frame/image/readout time * jfjoch_broker: Extra messages added for receiver operation (to be removed after debugging finished) * jfojch_broker: Improve profiling of different data analysis steps * jfjoch_broker: Record integration reflection count * jfjoch_broker: Fix bug where ZeroMQ preview frequency was confusing time units (micro vs. milliseconds) * jfjoch_broker: Fix bug where '/wait_till_done' got deadlocked * jfjoch_writer: Fix confusion between NaN and zero in floating-point datasets **Breaking changes**: detector definition is now using nanoseconds to define minimum frame time, minimum count time and readout time. Reviewed-on: #49	2026-04-29 09:50:50 +02:00
leonarski_fandtakaba_k	230480e390	v1.0.0-rc.138 (#48) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. jfjoch_broker: Cleanup DECTRIS start-up code to enable a shorter start time jfjoch_broker: Allow for asynchronous start to allow overlapping detector configuration with other beamline preparations jfjoch_broker: Goniometer axis name is converted to lowercase jfjoch_broker: Fix bug, where wrong HTTP error codes were returned jfjoch_broker: Improve sigma estimation during merging (K. Takaba) --------- Co-authored-by: takaba_k <kiyofumi.takaba@psi.ch> Reviewed-on: #48 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>	2026-04-27 19:56:14 +02:00
leonarski_f	6133da1377	v1.0.0-rc.133 ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Use httplib for HTTP server instead of Pistache * jfjoch_broker: Drop OpenSSL support * jfjoch_broker: Base work for multi-lattice support in the future * Update dependencies to more recent versions (spdlog, HDF5, Catch2, httplib) Reviewed-on: #41	2026-03-26 20:50:33 +01:00
leonarski_f	4dbbf0e365	v1.0.0-rc.97 ... This is an UNSTABLE release and not recommended for production use (please use rc.96 instead). * jfjoch_broker: For DECTRIS detectors add dark data collection during initialization for bad pixel mask * jfjoch_broker: Refactor of calibration logic for more clear code (likely to introduce problems) * jfjoch_viewer: Add option to handle user pixel mask (experimental) * jfjoch_viewer: More options for ROI * jfjoch_viewer: Add window to display calibration Reviewed-on: #2 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>	2025-11-09 12:42:27 +01:00
leonarski_f	a7c92923ec	Bugfix to rc.75	2025-09-11 09:58:03 +02:00
leonarski_f	e7a89e1209	DectrisSimplonClient: EIGER2 missing min threshold	2025-09-11 09:00:29 +02:00
leonarski_f	29ecd3515a	patch to 1.0.0-rc.36	2025-05-07 16:24:35 +02:00
leonarski_f	040cf08386	v1.0.0-rc.36	2025-05-05 19:32:22 +02:00