5 Commits

Include renames

Author	SHA1	Message	Date
leonarski_fandClaude Opus 4.8	7d5fb15413	Unify still processing on one --force-still flag; scaling follows rotation indexing ... Fold the two overlapping knobs into one. Rotation-vs-stills is now a single decision (IsRotationIndexing() = goniometer && rotation-indexing) that drives BOTH indexing and scaling/merging - there is no independent scaling-model switch: - ScalingSettings: drop combine_3d and force_still_processing (and Combine3D/GetCombine3D, ForceStillProcessing/GetForceStillProcessing). The scaling stage reads experiment.IsRotationIndexing() instead - rotation indexing implies RotationScaleMerge, no rotation indexing implies per-image ScaleOnTheFly. - jfjoch_process: merge --process-as-stills and --force-still-processing into one --force-still (turns rotation processing off entirely: still indexing + still scaling). The rotation-specific scaling defaults (scale-fulls, smooth-G, capture uncertainty, outlier rejection) now key on rotation_indexing. - jfjoch_scale: replace -P fixed|rot3d with --force-still; rotation is auto-detected from the goniometer (RotationIndexing set accordingly) so it matches jfjoch_process. - jfjoch_viewer: the "process as stills" toggle already sets RotationIndexing; drop the now redundant Combine3D/ForceStillProcessing calls. Rotation path unchanged (lyso 16.4/99.6%/87.3%); --force-still routes to ScaleOnTheFly; the -R + --force-still conflict still errors. CUDA + non-CUDA + viewer all build. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-03 12:20:45 +02:00
leonarski_fandClaude Opus 4.8	b4d3d40cd8	Replace the dead PartialityModel with a force_still_processing flag ... With ScaleOnTheFly now fixed-only and rotation routed through RotationScaleMerge, the PartialityModel enum carried no information (it was always Rotation for rotation processing, Fixed otherwise, and mirrored combine_3d). Drop it: - ScalingSettings: `partiality_mode` (PartialityModel) -> `force_still_processing` (bool); SetPartialityModel/GetPartialityModel -> ForceStillProcessing/GetForceStillProcessing. Remove the enum. - DiffractionExperiment: drop GetPartialityModel(); the rotation-vs-stills decision is now just GetCombine3D() (set by the tool = rotation && !force_still). The wedge getters no longer key off the model (dead since wedge refinement was removed). - jfjoch_process: `-P/--partiality fixed|rot3d` -> `--force-still-processing` (a rotation dataset scaled as independent stills). Auto-detect sets combine_3d for rotation data unless the flag is given. - jfjoch_scale: `-P fixed|rot3d` now toggles combine_3d directly (no PartialityModel). - jfjoch_viewer: the "process as stills" toggle sets ForceStillProcessing(!rotation_mode) - UI unchanged, just wired to the new field. PartialityModel was never in the OpenAPI, so no generated clients change. Rotation path behaviour is unchanged (lyso 16.4/99.6%/87.3%); --force-still-processing correctly routes to ScaleOnTheFly. CUDA + non-CUDA + viewer all build. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-03 11:58:34 +02:00
leonarski_fandClaude Opus 4.8	9f45935fd3	Scale/merge: rotation -> RotationScaleMerge, stills -> ScaleOnTheFly (fixed) ... Consolidate the offline scaling/merging on two engines and delete the old classic rotation chain: - ScaleOnTheFly now implements ONLY the fixed-partiality model: it uses each reflection's stored partiality as-is (1 for stills, the zeta/erf rocking-curve value already set at prediction for rotation). Dropped the Rotation partiality recompute, the unity override, the ceres rotation residual, and all wedge/mosaicity refinement. - Remove Combine3D (CombineRotationObservations): its 3D-combine lives in RotationScaleMerge. - JFJochProcess / jfjoch_scale: rotation (-P rot3d) goes through RotationScaleMerge for the whole self-scale -> 3D combine -> scale-fulls -> merge; stills self-scale with ScaleOnTheFly + MergeOnTheFly. RotationScaleMerge does not support external-reference scaling, B-factor refinement, an absorption surface or wedge refinement, so those combinations now throw instead of silently falling back. Deleted the classic ScaleFulls / AbsorptionSurface / SmoothImageScaleG helpers. - CLI cleanup: drop -w/--wedge (wedge refinement) and --absorption (both tools), and the now dead -P values rot and unity (keep fixed | rot3d). Fix the -P round-trip in the reproduced command line. Behaviour on the rotation path is unchanged: the full 18-crystal battery matches the pre-cleanup metrics (SG/ISa/CC1.2/completeness) exactly on all 15 deterministic crystals. Non-CUDA build unaffected. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-03 11:41:49 +02:00
leonarski_f	54c667190f	v1.0.0-rc.155 (#65) ... This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * jfjoch_process: Remove pixelrefine option (replaced with ProfileIntegrate2D) * jfjoch_viewer: Some graphical improvements. * jfjoch_viewer: Simplify und unify data analysis settings. * jfjoch_writer: Add TCP keepalive to increase robustness if jfjoch_broker "dies" in the middle of data acquisition. Reviewed-on: #65	2026-06-25 22:01:48 +02:00
leonarski_f	75e401f0e5	v1.0.0-rc.153 (#63) ... This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * jfjoch_broker: Add EXPERIMENTAL pixelrefine mode for image processing * jfjoch_broker: Allow to load user mask from 8-bit and 16-bit TIFF files * jfjoch_broker: Add ROI calculation in non-FPGA workflow * jfjoch_broker: Fixes to TCP image pusher * jfjoch_broker: Remove NUMA bindings * jfjoch_broker: Improvements to indexing * jfjoch_broker: For PSI EIGER, trimming energies are taken from the detector configuration (now compulsory) instead of hardcoded values * jfjoch_writer: Save ROI definitions and the per-pixel ROI bitmap in the master file; azimuthal ROIs support phi (angular) sectors * jfjoch_viewer: Major redesign with dockable panels and saved layouts, plus on-canvas creation/move/resize of box, circle and azimuthal ROIs * jfjoch_viewer: Run jfjoch_process reprocessing jobs from inside the GUI and overlay per-run results Reviewed-on: #63	2026-06-23 20:29:49 +02:00