2 Commits

Include renames

Author	SHA1	Message	Date
leonarski_fandClaude Opus 5.5	a8c559bf6b	tests: jfjoch_portable_test, quick [portable] checks for the macOS and Windows jobs ... A Catch2 executable that builds in the portable configurations (JFJOCH_VIEWER_ONLY / JFJOCH_RUGNUX_ONLY) and links only what those build - JFJochRugnux, JFJochReader, JFJochImageAnalysis, JFJochWriter, JFJochCommon - so it can run on the macOS arm64 and Windows x64 jobs, where the receiver/broker/FPGA/HLS sources are not built and there is no GPU. EXCLUDE_FROM_ALL, so a product build does not pay for it; catch2 is now made available in the portable configure as well (it is EXCLUDE_FROM_ALL too). The cases tagged [portable] cover what depends on the architecture, the compiler or the standard library: bitshuffle/LZ4/zstd, HDF5 read-back (legacy/VDS/integrated, the direct-chunk path), miniCBF/marCCD/SMV header parsing, CBOR, CPU spot finding, azimuthal mapping, Bragg prediction/integration, gemmi MTZ/mmCIF. New in tests/PortableTest.cpp: - a golden FNV-1a hash of two frames of compression_benchmark.h5, decoded from the raw chunk by the hperf and the classic bitshuffle and through the HDF5 filter (x86 hashes affea29c511b6ec2 / e46913009c95a1f1); - a golden hash of a bitshuffle/LZ4 encode (the writer must produce the same bytes everywhere); - the shipped bitshuffle block selector against the classic reference over elem 1/2/4/8 and block tails; - the FFTW indexer, named explicitly, on a synthetic orthorhombic lattice (the existing FFT indexer lattice tests run only under CUDA); - a 4-frame end-to-end rugnux run on the git-LFS rotation dataset (HDF5 via external links, CPU spot finding, indexing, integration); SKIPs when LFS was not pulled. All 45 take ~4 s on Linux (~2 s without the LFS case), CPU-only build. M_PI replaced by PI (common/JFJochMath.h) in the two tagged files that used it, as MSVC does not define M_PI. The CBF gzip test shells out to gzip and is left untagged. CI: build and run jfjoch_portable_test "[portable]" in build-windows (both variants), build-rugnux-windows, build-macos-viewer and build-rugnux-macos, after the build and before packaging. Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01D1G8gJVAy6gp1K5Dz3NE5C	2026-09-27 23:44:53 +02:00
leonarski_f	6dfe065365	v1.0.0-rc.172 (#82) ... * Fixed `jfjoch_broker` cancelling every data collection with a CUDA "out of memory" error after long operation: GPU memory no longer leaks with each collection. * Rugnux scales a rotation sweep until the per-frame scales settle instead of for a fixed three rounds, and says so when they did not - merged intensities, and the space group, resolution cut and frame rejection read off them, change accordingly; `--scaling-iterations` is now the cap on that loop (default 100). * Rugnux places every frame of a marCCD, SMV or miniCBF series at the spindle angle its own header states, so a series with missing frames, or with angles written modulo 360, is no longer read at the wrong geometry or refused. * Every rotation run writes two diagnostic files beside its reflections: `<prefix>_detector.jpg`, the detector projection with the pixel mask and the detected beam-stop shadow drawn on it, and `<prefix>_plot.txt`, one row per image. Reviewed-on: #82 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>	2026-09-22 06:48:37 +02:00