5 Commits

Include renames

Author	SHA1	Message	Date
leonarski_f	067f3a7d7b	docs landing: Rugnux card names synchrotron rotation and XFEL serial data and links the public test-data lists; footer motto removed ... The Rugnux card says in passing that it takes a synchrotron rotation sweep or XFEL serial stills, and ends with one sentence pointing at the two pages that list the public datasets it is validated on (External test data: over 200 rotation sets, 207 in the open battery manifest; External test data: serial crystallography: eleven CXIDB entries). The "two mountains, two railways" line at the foot of the page is dropped. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu (cherry picked from commit 03e4431836a2f4ba816e6d3cdd57cc6ada87b95d)	2026-10-26 16:59:43 +01:00
leonarski_f	2736f4c85e	Docs landing page: the hero is a live Rugnux run - a frame, the placed model in its density, the timeline ... The front page's hero image is now the cytochrome C collection at SLS X10SA as the broker's Rugnux live page ran it: a detector frame on the page's indigo beside the AlphaFold model placed in its electron density, over the two-lane timeline of the live analysis (the 18 s collection, the image processing alongside it, scaling, merging and molecular replacement 4.9 s after the last image). One WebP per theme (hero_live_light.webp, hero_live_dark.webp), shown by the same rules that pick the theme's colour tokens, so the toggle and the system preference both switch it; the hero's art column widens to 560 px on desktop (360 px on a phone). The lysozyme frame and its generator go; the Sphinx extension copies the two new files into the site. Made by docs/landing/hero_live/. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu (cherry picked from commit 5f2592390d9ec39428198df8cd8e18ad60167a79)	2026-10-26 16:54:39 +01:00
leonarski_f	1b48f3873f	docs: front page and quick start - Rugnux goes on to a refined structure with a model ... Landing page (title, hero, lede, Rugnux card), the documentation home's Rugnux card and the opening of RUGNUX.md now say what the program does: from diffraction images to merged data and, with a model, on to a refined structure and maps. RUGNUX.md Quick start is rebuilt around how a run is started: rotation (master file, or the first frame of a CBF/marCCD/SMV sweep), serial stills (several masters or all of a dataset's files by glob), serial stills with -C/-S and --crystfel-geometry (wavelength/distance flags only where the files state neither), and with a model (positional or --model): placement by rigid body or MR, refinement by default (--no-refine), maps and blobs, and that the model changes no processing decision except the indexing choice on serial stills with -C/-S. It says plainly that the defaults are meant to be the answer, and lists the output files with and without a model. The tutorial's stills section drops -X ffbidx, -z and the resolution limit from its first example and shows the same three stills commands. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu (cherry picked from commit bfca846332037688364b9d2d1c4250315f09410d)	2026-10-26 15:23:07 +01:00
leonarski_f	f960bd7a80	Docs landing page: a real diffraction frame in the hero, and the command with a model ... The generated spot-and-ring drawing is replaced by one 0.2 deg rotation frame of the in-house lysozyme standard (EIGER2 16M, SLS X10SA): Bragg spots on their lunes, the beam stop and its arm, the module gaps. docs/landing/hero_frame.py makes the 920 px WebP (67 KB) from the master file - crop about the beam centre, log tone map from the frame's own background, block mean+max downsampling - and is run by hand; the WebP is committed and copied by the landing-page step. The dark theme shows it inverted through a CSS filter. The hero's command line drops its explanatory sentence and gains the second form, rugnux <diffraction image file> <CIF/PDB model file>. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu (cherry picked from commit ff26000bfe7446cb4fda739c3b72596f8a8b7047)	2026-10-26 10:53:25 +01:00
leonarski_f	8ff2abf3aa	docs: a standalone front page with the three programs and the downloads, the Sphinx tree one page below it ... docs/landing/ is a self-contained page (HTML, CSS, a little JS, no framework): a hero, a card per program, the download section with the archives of the newest release and the reader's own platform marked, the licence in one paragraph, light and dark. The jfjoch_downloads extension renders it into the HTML output root as index.html at the end of every Sphinx build, so it is served wherever the documentation is - Read the Docs, the gitea-pages branch and the broker's frontend bundle - and its download buttons are the same ones as on the Sphinx download pages, built from the configured release and repointed at the newest published one by the shared script. The Sphinx root page moves to documentation.html (root_doc), and the frontend's documentation frame opens that page. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu (cherry picked from commit 64cde61f0b941b3e8c99eaa9b74afeaa75aefc78)	2026-10-25 07:20:29 +01:00