3 Commits

Include renames

Author	SHA1	Message	Date
leonarski_fandClaude Opus 5	df3696e6e2	reader: fall back to the pre-NXmx key names, so an Eiger 1.x master opens ... Firmware 1.x writes the same three values under different names. Try the NXmx spelling first and the old one only if it is absent: detector/distance <- detector/detector_distance detector/saturation_value <- detectorSpecific/countrate_correction_count_cutoff sample/transformations <- sample/goniometer This cannot change what a current file reads: every modern Eiger master carries BOTH spellings. Measured on thirteen masters from ten facilities, firmware release-2020.2.1 through release-2024.1.1 - all of them write detector_distance and countrate_correction_count_cutoff beside the NXmx names, and a goniometer group beside the transformations one. The goniometer is the one that matters. A goniometer is only ever set from that one group, so a file whose axes are somewhere else was not an error - it was read as STILLS, silently, and the run completed with the wrong answer. The old layout also tags no axis with transformation_type and gives no vector, both of which ReadAxis required, so absence now means two different things by layout: in a transformations group it still means "not an axis" (that is how AXISNAME_end and the width scalars are skipped), while in the legacy group every leaf IS an axis and the companions are recognised by name instead. A missing direction defaults to the one every DECTRIS master since has written and says so in a warning rather than assuming it silently; a wrong guess there does not index, so it is visible, and the rotation first pass tries the opposite sign anyway. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>	2026-08-28 21:56:12 +02:00
leonarski_f	451310f43d	v1.0.0-rc.158 (#68) ... This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * Analysis: The azimuthal-integration solid-angle correction now follows the incidence angle to the detector normal (`cos^3` of that angle) instead of `cos^3(2*theta)`, so it is correct for a tilted detector and matches PyFAI `solidAngleArray` and MAX IV azint (unchanged for an untilted detector). Crystal geometry refinement (`XtalOptimizer`) no longer silently ignores an imported PONI `rot3` (rotation about the beam): it is applied as a fixed rotation in the residual so refinement stays consistent with the rest of the pipeline. Polarization and azimuthal binning already honoured `rot3` through the full PONI rotation. * jfjoch_viewer: Open datasets on the WSL2/UNC filesystem (paths starting `\\`); write processing outputs next to the input file, with a Browse button and independent `_process.h5` / merged `.mtz`/`.cif` toggles; and show the determined space group in the merge-statistics window. * rugnux: Accept an absolute `-o` output prefix in offline processing. * Packaging: The self-contained Linux viewer `.tgz` now bundles cuFFT, so it runs without a system CUDA toolkit (`.deb`/`.rpm` are unchanged, distro-managed). * Docs: Bring the analysis references up to date with the code. `docs/CPU_DATA_ANALYSIS.md` now reflects the unified profile-fit Bragg integration engine, multi-lattice indexing, azimuthal phi binning, the radial parallax/bandwidth profile with sub-pixel centring, the rot3d capture-fraction handling and the automatic CC1/2 resolution cutoff, and drops the descriptions of features that were never implemented (French-Wilson amplitudes, the still excitation-error partiality model); `docs/RUGNUX.md` documents the new `--resolution-cutoff`/`--resolution-cc-target`/`--resolution-shells`, `--min-captured-fraction`, `--mosaicity`, `--reference-column`, the azimuthal correction toggles and the geometry-override options, and corrects the `-N` default. The outdated in-source design notes (ICE_RING_DETECTION, BRAGG_INTEGRATION_ENGINE, NEXTGEN_INTEGRATOR) are removed.Reviewed-on: #68 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>	2026-07-12 19:42:29 +02:00
leonarski_f	75e401f0e5	v1.0.0-rc.153 (#63) ... This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * jfjoch_broker: Add EXPERIMENTAL pixelrefine mode for image processing * jfjoch_broker: Allow to load user mask from 8-bit and 16-bit TIFF files * jfjoch_broker: Add ROI calculation in non-FPGA workflow * jfjoch_broker: Fixes to TCP image pusher * jfjoch_broker: Remove NUMA bindings * jfjoch_broker: Improvements to indexing * jfjoch_broker: For PSI EIGER, trimming energies are taken from the detector configuration (now compulsory) instead of hardcoded values * jfjoch_writer: Save ROI definitions and the per-pixel ROI bitmap in the master file; azimuthal ROIs support phi (angular) sectors * jfjoch_viewer: Major redesign with dockable panels and saved layouts, plus on-canvas creation/move/resize of box, circle and azimuthal ROIs * jfjoch_viewer: Run jfjoch_process reprocessing jobs from inside the GUI and overlay per-run results Reviewed-on: #63	2026-06-23 20:29:49 +02:00