Add deep learning resolution estimation model from Stanford

2024-02-08 20:15:29 +01:00
1 parent 1b4ab88f54
commit 8dcecb9685
@@ -27,6 +27,13 @@ SET(JFJOCH_WRITER_ONLY    OFF CACHE BOOL "Compile HDF5 writer only")
 INCLUDE_DIRECTORIES(include)
 INCLUDE(CheckIncludeFile)

+#This is to supress error in TORCH
+
+IF ((NOT EXISTS /usr/bin/python) AND (EXISTS /usr/bin/python3))
+    SET(PYTHON_EXECUTABLE /usr/bin/python3)
+ENDIF()
+
+FIND_PACKAGE(Torch HINTS /opt/libtorch/share/cmake/Torch/)
 FIND_LIBRARY(NUMA_LIBRARY NAMES numa DOC "NUMA Library")
 CHECK_INCLUDE_FILE(numaif.h HAS_NUMAIF)
 CHECK_INCLUDE_FILE(numa.h HAS_NUMA_H)
@@ -54,6 +61,7 @@ ELSE()
    ADD_SUBDIRECTORY(tests)
    ADD_SUBDIRECTORY(tools)
    ADD_SUBDIRECTORY(export_images)
+    ADD_SUBDIRECTORY(resonet)
    SET(jfjoch_executables jfjoch_broker jfjoch_writer CatchTest CompressionBenchmark HDF5DatasetWriteTest jfjoch_udp_simulator sls_detector_put sls_detector_get)
 ENDIF()

@@ -38,6 +38,7 @@ Optional:
 * CUDA compiler version 11 or newer - image analysis features won't work without it
 * NUMA library
 * Node.js - to make frontend
+* libtorch - for resolution estimation using model from Stanford - see below

 provided as GIT submodules: SLS Detector Package, tinycbor (Intel), Zstandard (Facebook), Pistache webserver and fast replacement for bitshuffle filter (DECTRIS). 

@@ -90,5 +91,16 @@ Automated test routine is then accessible as `tests/CatchTest`. There are also b

 In addition, tests are executed to verify that datasets written by Jungfraujoch are readable with XDS Durin plugin and CrystFEL. Input files for these programs are placed in `xds_durin` and `crystfel` folders. See `.gitlab-ci.yml` for details.

+## Resolution estimation

+Resolution estimation can be done with a recent deep learning model by D. Mendez et al. 
+(see [Acta Cryst D, 80, 26-43](https://doi.org/10.1107/S2059798323010586)), adapted to Jungfraujoch. 
+Model used in the original paper is located in the [resonet/](resonet) directory, after converting to TorchScript format.
+
+To use the feature it is necessary to install [libtorch](https://pytorch.org/) library, preferably in `/opt/libtorch` location. The C++11 ABI version needs to be chosen.
+For RHEL 8 systems, please download older version 2.1.0, as version 2.2.0 requires newer `glibc` library than available with the operating system. 
+Version 2.1.0 can be downloaded with the following command:
+```
+wget https://download.pytorch.org/libtorch/cu121/libtorch-cxx11-abi-shared-with-deps-2.1.0%2Bcu121.zip
+```

@@ -1,4 +1,4 @@
-ADD_LIBRARY(JungfraujochAcqusitionDevice STATIC
+ADD_LIBRARY(JFJochAcquisitionDevice STATIC
        AcquisitionDevice.cpp AcquisitionDevice.h
        AcquisitionCounters.cpp AcquisitionCounters.h
        HLSSimulatedDevice.cpp HLSSimulatedDevice.h
@@ -8,4 +8,4 @@ ADD_LIBRARY(JungfraujochAcqusitionDevice STATIC
        AcquisitionDeviceGroup.cpp
        AcquisitionDeviceGroup.h)

-TARGET_LINK_LIBRARIES(JungfraujochAcqusitionDevice JungfraujochDevice CommonFunctions HLSSimulation JFCalibration)
+TARGET_LINK_LIBRARIES(JFJochAcquisitionDevice JFJochDevice JFJochCommon JFJochHLSSimulation JFCalibration)
@@ -9,7 +9,7 @@ ADD_LIBRARY(JFJochBroker STATIC
        JFJochServices.cpp JFJochServices.h
        JFJochBrokerHttp.cpp JFJochBrokerHttp.h JFJochBrokerParser.cpp JFJochBrokerParser.h)

-TARGET_LINK_LIBRARIES(JFJochBroker JFJochReceiver JFJochDetector CommonFunctions JFJochAPI)
+TARGET_LINK_LIBRARIES(JFJochBroker JFJochReceiver JFJochDetector JFJochCommon JFJochAPI)

 ADD_EXECUTABLE(jfjoch_broker jfjoch_broker.cpp)
 TARGET_LINK_LIBRARIES(jfjoch_broker JFJochBroker)
@@ -703,3 +703,9 @@ void JFJochBrokerHttp::preview_jpeg_settings_put(const org::openapitools::server
    state_machine.SetPreviewJPEGSettings(Convert(previewSettings));
    response.send(Pistache::Http::Code::Ok);
 }
+
+void JFJochBrokerHttp::plot_resolution_estimate_histogram_get(Pistache::Http::ResponseWriter &response) {
+    PlotRequest req{.type = PlotType::ResEstimation, .binning = 0};
+    auto plot = state_machine.GetPlots(req);
+    ProcessOutput(Convert(plot), response);
+}
@@ -71,6 +71,8 @@ class JFJochBrokerHttp : public org::openapitools::server::api::DefaultApi {
    void plot_spot_count_post(const org::openapitools::server::model::Plot_request &plotRequest,
                              Pistache::Http::ResponseWriter &response) override;

+    void plot_resolution_estimate_histogram_get(Pistache::Http::ResponseWriter &response) override;
+
    void statistics_calibration_get(Pistache::Http::ResponseWriter &response) override;

    void statistics_data_collection_get(Pistache::Http::ResponseWriter &response) override;
@@ -102,6 +104,7 @@ class JFJochBrokerHttp : public org::openapitools::server::api::DefaultApi {
    void preview_jpeg_settings_put(const org::openapitools::server::model::Preview_settings &previewSettings,
                                   Pistache::Http::ResponseWriter &response) override;

+
    void GetStaticFile(const Pistache::Rest::Request &request, Pistache::Http::ResponseWriter response);
    std::pair<Pistache::Http::Code, std::string> handleOperationException(const std::exception &ex) const noexcept override;

@@ -273,6 +273,7 @@ void ParseFacilityConfiguration(const nlohmann::json &input, const std::string&
                                      "omega_axis must be float array of 3");
        }

+        experiment.NeuralNetModelPath(GET_STR(j, "neural_net_model", ""));
        experiment.PedestalG0Frames(GET_I64(j, "pedestal_g0_frames"));
        experiment.PedestalG1Frames(GET_I64(j, "pedestal_g1_frames"));
        experiment.PedestalG2Frames(GET_I64(j, "pedestal_g2_frames"));
@@ -54,6 +54,7 @@ void DefaultApi::setupRoutes() {
    Routes::Get(*router, base + "/plot/rad_int", Routes::bind(&DefaultApi::plot_rad_int_get_handler, this));
    Routes::Get(*router, base + "/plot/rad_int_per_file", Routes::bind(&DefaultApi::plot_rad_int_per_file_get_handler, this));
    Routes::Post(*router, base + "/plot/receiver_delay", Routes::bind(&DefaultApi::plot_receiver_delay_post_handler, this));
+    Routes::Get(*router, base + "/plot/resolution_estimate_histogram", Routes::bind(&DefaultApi::plot_resolution_estimate_histogram_get_handler, this));
    Routes::Post(*router, base + "/plot/roi_sum", Routes::bind(&DefaultApi::plot_roi_sum_post_handler, this));
    Routes::Post(*router, base + "/plot/saturated_pixel", Routes::bind(&DefaultApi::plot_saturated_pixel_post_handler, this));
    Routes::Post(*router, base + "/plot/spot_count", Routes::bind(&DefaultApi::plot_spot_count_post_handler, this));
@@ -628,6 +629,26 @@ void DefaultApi::plot_receiver_delay_post_handler(const Pistache::Rest::Request
        response.send(Pistache::Http::Code::Internal_Server_Error, e.what());
    }

+}
+void DefaultApi::plot_resolution_estimate_histogram_get_handler(const Pistache::Rest::Request &, Pistache::Http::ResponseWriter response) {
+    try {
+
+
+    try {
+        this->plot_resolution_estimate_histogram_get(response);
+    } catch (Pistache::Http::HttpError &e) {
+        response.send(static_cast<Pistache::Http::Code>(e.code()), e.what());
+        return;
+    } catch (std::exception &e) {
+        const std::pair<Pistache::Http::Code, std::string> errorInfo = this->handleOperationException(e);
+        response.send(errorInfo.first, errorInfo.second);
+        return;
+    }
+
+    } catch (std::exception &e) {
+        response.send(Pistache::Http::Code::Internal_Server_Error, e.what());
+    }
+
 }
 void DefaultApi::plot_roi_sum_post_handler(const Pistache::Rest::Request &request, Pistache::Http::ResponseWriter response) {
    try {
@@ -78,6 +78,7 @@ private:
    void plot_rad_int_get_handler(const Pistache::Rest::Request &request, Pistache::Http::ResponseWriter response);
    void plot_rad_int_per_file_get_handler(const Pistache::Rest::Request &request, Pistache::Http::ResponseWriter response);
    void plot_receiver_delay_post_handler(const Pistache::Rest::Request &request, Pistache::Http::ResponseWriter response);
+    void plot_resolution_estimate_histogram_get_handler(const Pistache::Rest::Request &request, Pistache::Http::ResponseWriter response);
    void plot_roi_sum_post_handler(const Pistache::Rest::Request &request, Pistache::Http::ResponseWriter response);
    void plot_saturated_pixel_post_handler(const Pistache::Rest::Request &request, Pistache::Http::ResponseWriter response);
    void plot_spot_count_post_handler(const Pistache::Rest::Request &request, Pistache::Http::ResponseWriter response);
@@ -268,6 +269,13 @@ private:
    /// <param name="plotRequest"> (optional)</param>
    virtual void plot_receiver_delay_post(const org::openapitools::server::model::Plot_request &plotRequest, Pistache::Http::ResponseWriter &response) = 0;
    /// <summary>
+    /// Generate resolution estimate histogram
+    /// </summary>
+    /// <remarks>
+    /// Generate histogram of crystal resolutions from 1.0 to 5.0 A based on ML model
+    /// </remarks>
+    virtual void plot_resolution_estimate_histogram_get(Pistache::Http::ResponseWriter &response) = 0;
+    /// <summary>
    /// Generate ROI sum plot
    /// </summary>
    /// <remarks>
@@ -22,14 +22,9 @@ namespace org::openapitools::server::model
 Detector_status::Detector_status()
 {
    m_State = "";
-    m_StateIsSet = false;
    m_Powerchip = "";
-    m_PowerchipIsSet = false;
    m_Server_version = "";
-    m_Server_versionIsSet = false;
    m_Number_of_triggers_left = 0L;
-    m_Number_of_triggers_leftIsSet = false;
-    m_Fpga_temp_degCIsSet = false;
    
 }

@@ -53,8 +48,8 @@ bool Detector_status::validate(std::stringstream& msg, const std::string& pathPr
    const std::string _pathPrefix = pathPrefix.empty() ? "Detector_status" : pathPrefix;

                         
-    if (fpgaTempDegCIsSet())
-    {
+    
+    /* Fpga_temp_degC */ {
        const std::vector<int64_t>& value = m_Fpga_temp_degC;
        const std::string currentValuePath = _pathPrefix + ".fpgaTempDegC";
                
@@ -82,20 +77,20 @@ bool Detector_status::operator==(const Detector_status& rhs) const
    return
    
    
+    (getState() == rhs.getState())
+     &&
    
-    ((!stateIsSet() && !rhs.stateIsSet()) || (stateIsSet() && rhs.stateIsSet() && getState() == rhs.getState())) &&
+    (getPowerchip() == rhs.getPowerchip())
+     &&
    
+    (getServerVersion() == rhs.getServerVersion())
+     &&
    
-    ((!powerchipIsSet() && !rhs.powerchipIsSet()) || (powerchipIsSet() && rhs.powerchipIsSet() && getPowerchip() == rhs.getPowerchip())) &&
+    (getNumberOfTriggersLeft() == rhs.getNumberOfTriggersLeft())
+     &&
    
+    (getFpgaTempDegC() == rhs.getFpgaTempDegC())
    
-    ((!serverVersionIsSet() && !rhs.serverVersionIsSet()) || (serverVersionIsSet() && rhs.serverVersionIsSet() && getServerVersion() == rhs.getServerVersion())) &&
-    
-    
-    ((!numberOfTriggersLeftIsSet() && !rhs.numberOfTriggersLeftIsSet()) || (numberOfTriggersLeftIsSet() && rhs.numberOfTriggersLeftIsSet() && getNumberOfTriggersLeft() == rhs.getNumberOfTriggersLeft())) &&
-    
-    
-    ((!fpgaTempDegCIsSet() && !rhs.fpgaTempDegCIsSet()) || (fpgaTempDegCIsSet() && rhs.fpgaTempDegCIsSet() && getFpgaTempDegC() == rhs.getFpgaTempDegC()))
    
    ;
 }
@@ -108,46 +103,21 @@ bool Detector_status::operator!=(const Detector_status& rhs) const
 void to_json(nlohmann::json& j, const Detector_status& o)
 {
    j = nlohmann::json();
-    if(o.stateIsSet())
-        j["state"] = o.m_State;
-    if(o.powerchipIsSet())
-        j["powerchip"] = o.m_Powerchip;
-    if(o.serverVersionIsSet())
-        j["server_version"] = o.m_Server_version;
-    if(o.numberOfTriggersLeftIsSet())
-        j["number_of_triggers_left"] = o.m_Number_of_triggers_left;
-    if(o.fpgaTempDegCIsSet() || !o.m_Fpga_temp_degC.empty())
-        j["fpga_temp_degC"] = o.m_Fpga_temp_degC;
+    j["state"] = o.m_State;
+    j["powerchip"] = o.m_Powerchip;
+    j["server_version"] = o.m_Server_version;
+    j["number_of_triggers_left"] = o.m_Number_of_triggers_left;
+    j["fpga_temp_degC"] = o.m_Fpga_temp_degC;
    
 }

 void from_json(const nlohmann::json& j, Detector_status& o)
 {
-    if(j.find("state") != j.end())
-    {
-        j.at("state").get_to(o.m_State);
-        o.m_StateIsSet = true;
-    } 
-    if(j.find("powerchip") != j.end())
-    {
-        j.at("powerchip").get_to(o.m_Powerchip);
-        o.m_PowerchipIsSet = true;
-    } 
-    if(j.find("server_version") != j.end())
-    {
-        j.at("server_version").get_to(o.m_Server_version);
-        o.m_Server_versionIsSet = true;
-    } 
-    if(j.find("number_of_triggers_left") != j.end())
-    {
-        j.at("number_of_triggers_left").get_to(o.m_Number_of_triggers_left);
-        o.m_Number_of_triggers_leftIsSet = true;
-    } 
-    if(j.find("fpga_temp_degC") != j.end())
-    {
-        j.at("fpga_temp_degC").get_to(o.m_Fpga_temp_degC);
-        o.m_Fpga_temp_degCIsSet = true;
-    } 
+    j.at("state").get_to(o.m_State);
+    j.at("powerchip").get_to(o.m_Powerchip);
+    j.at("server_version").get_to(o.m_Server_version);
+    j.at("number_of_triggers_left").get_to(o.m_Number_of_triggers_left);
+    j.at("fpga_temp_degC").get_to(o.m_Fpga_temp_degC);
    
 }

@@ -158,15 +128,6 @@ std::string Detector_status::getState() const
 void Detector_status::setState(std::string const& value)
 {
    m_State = value;
-    m_StateIsSet = true;
-}
-bool Detector_status::stateIsSet() const
-{
-    return m_StateIsSet;
-}
-void Detector_status::unsetState()
-{
-    m_StateIsSet = false;
 }
 std::string Detector_status::getPowerchip() const
 {
@@ -175,15 +136,6 @@ std::string Detector_status::getPowerchip() const
 void Detector_status::setPowerchip(std::string const& value)
 {
    m_Powerchip = value;
-    m_PowerchipIsSet = true;
-}
-bool Detector_status::powerchipIsSet() const
-{
-    return m_PowerchipIsSet;
-}
-void Detector_status::unsetPowerchip()
-{
-    m_PowerchipIsSet = false;
 }
 std::string Detector_status::getServerVersion() const
 {
@@ -192,15 +144,6 @@ std::string Detector_status::getServerVersion() const
 void Detector_status::setServerVersion(std::string const& value)
 {
    m_Server_version = value;
-    m_Server_versionIsSet = true;
-}
-bool Detector_status::serverVersionIsSet() const
-{
-    return m_Server_versionIsSet;
-}
-void Detector_status::unsetServer_version()
-{
-    m_Server_versionIsSet = false;
 }
 int64_t Detector_status::getNumberOfTriggersLeft() const
 {
@@ -209,15 +152,6 @@ int64_t Detector_status::getNumberOfTriggersLeft() const
 void Detector_status::setNumberOfTriggersLeft(int64_t const value)
 {
    m_Number_of_triggers_left = value;
-    m_Number_of_triggers_leftIsSet = true;
-}
-bool Detector_status::numberOfTriggersLeftIsSet() const
-{
-    return m_Number_of_triggers_leftIsSet;
-}
-void Detector_status::unsetNumber_of_triggers_left()
-{
-    m_Number_of_triggers_leftIsSet = false;
 }
 std::vector<int64_t> Detector_status::getFpgaTempDegC() const
 {
@@ -226,15 +160,6 @@ std::vector<int64_t> Detector_status::getFpgaTempDegC() const
 void Detector_status::setFpgaTempDegC(std::vector<int64_t> const value)
 {
    m_Fpga_temp_degC = value;
-    m_Fpga_temp_degCIsSet = true;
-}
-bool Detector_status::fpgaTempDegCIsSet() const
-{
-    return m_Fpga_temp_degCIsSet;
-}
-void Detector_status::unsetFpga_temp_degC()
-{
-    m_Fpga_temp_degCIsSet = false;
 }


@@ -64,50 +64,40 @@ public:
    /// </summary>
    std::string getState() const;
    void setState(std::string const& value);
-    bool stateIsSet() const;
-    void unsetState();
    /// <summary>
    /// Power on of ASICs
    /// </summary>
    std::string getPowerchip() const;
    void setPowerchip(std::string const& value);
-    bool powerchipIsSet() const;
-    void unsetPowerchip();
    /// <summary>
    /// Detector server (on read-out boards) version
    /// </summary>
    std::string getServerVersion() const;
    void setServerVersion(std::string const& value);
-    bool serverVersionIsSet() const;
-    void unsetServer_version();
    /// <summary>
    /// Remaining triggers to the detector (max of all modules)
    /// </summary>
    int64_t getNumberOfTriggersLeft() const;
    void setNumberOfTriggersLeft(int64_t const value);
-    bool numberOfTriggersLeftIsSet() const;
-    void unsetNumber_of_triggers_left();
    /// <summary>
    /// Temperature of detector FPGAs
    /// </summary>
    std::vector<int64_t> getFpgaTempDegC() const;
    void setFpgaTempDegC(std::vector<int64_t> const value);
-    bool fpgaTempDegCIsSet() const;
-    void unsetFpga_temp_degC();

    friend void to_json(nlohmann::json& j, const Detector_status& o);
    friend void from_json(const nlohmann::json& j, Detector_status& o);
 protected:
    std::string m_State;
-    bool m_StateIsSet;
+
    std::string m_Powerchip;
-    bool m_PowerchipIsSet;
+
    std::string m_Server_version;
-    bool m_Server_versionIsSet;
+
    int64_t m_Number_of_triggers_left;
-    bool m_Number_of_triggers_leftIsSet;
+
    std::vector<int64_t> m_Fpga_temp_degC;
-    bool m_Fpga_temp_degCIsSet;
+
    
 };

@@ -1131,6 +1131,17 @@ paths:
            application/json:
              schema:
                $ref: '#/components/schemas/plot'
+  /plot/resolution_estimate_histogram:
+    get:
+      summary: Generate resolution estimate histogram
+      description: Generate histogram of crystal resolutions from 1.0 to 5.0 A based on ML model
+      responses:
+        "200":
+          description: Everything OK
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/plot'
  /plot/rad_int:
    get:
      summary: Generate radial integration profile
@@ -341,7 +341,7 @@ data-styled.g137[id="sc-cMdfCE"]{content:"dvQijr,"}/*!sc*/

 <body>
  
-      <div id="redoc"><div class="sc-kUNLVD cSYMrW redoc-wrap"><div class="sc-iqziPC hHYXMN menu-content" style="top:0px;height:calc(100vh - 0px)"><div role="search" class="sc-emwzcK cUtpgV"><svg class="sc-cMdfCE dvQijr search-icon" version="1.1" viewBox="0 0 1000 1000" x="0px" xmlns="http://www.w3.org/2000/svg" y="0px"><path d="M968.2,849.4L667.3,549c83.9-136.5,66.7-317.4-51.7-435.6C477.1-25,252.5-25,113.9,113.4c-138.5,138.3-138.5,362.6,0,501C219.2,730.1,413.2,743,547.6,666.5l301.9,301.4c43.6,43.6,76.9,14.9,104.2-12.4C981,928.3,1011.8,893,968.2,849.4z M524.5,522c-88.9,88.7-233,88.7-321.8,0c-88.9-88.7-88.9-232.6,0-321.3c88.9-88.7,233-88.7,321.8,0C613.4,289.4,613.4,433.3,524.5,522z"></path></svg><input placeholder="Search..." aria-label="Search" type="text" class="sc-kjKYmT iiRHzu search-input" value=""/></div><div class="sc-kMzELR kIqtpW scrollbar-container undefined"><ul role="menu" class="sc-YltrM fTlmpg"><li tabindex="0" depth="2" data-item-id="/paths/~1initialize/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Initialize detector and data acquisition</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1pedestal/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Collect dark current for the detector</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1start/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Start detector</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1wait_till_done/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Wait for acquisition done</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1trigger/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Send soft trigger to the detector</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1cancel/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Cancel running data collection</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1deactivate/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Prepare detector to turn off</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1config~1detector/put" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="put" class="sc-dmcoYd gxSVta operation-type put">put</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Change detector configuration</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1config~1detector/get" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="get" class="sc-dmcoYd gxSVta operation-type get">get</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Get detector configuration</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1config~1spot_finding/put" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="put" class="sc-dmcoYd gxSVta operation-type put">put</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Configure spot finding</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1config~1spot_finding/get" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="get" class="sc-dmcoYd gxSVta operation-type get">get</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Get data processing configuration</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1config~1rad_int/put" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="put" class="sc-dmcoYd gxSVta operation-type put">put</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Configure radial integration</span></labelLine truncated
+      <div id="redoc"><div class="sc-kUNLVD cSYMrW redoc-wrap"><div class="sc-iqziPC hHYXMN menu-content" style="top:0px;height:calc(100vh - 0px)"><div role="search" class="sc-emwzcK cUtpgV"><svg class="sc-cMdfCE dvQijr search-icon" version="1.1" viewBox="0 0 1000 1000" x="0px" xmlns="http://www.w3.org/2000/svg" y="0px"><path d="M968.2,849.4L667.3,549c83.9-136.5,66.7-317.4-51.7-435.6C477.1-25,252.5-25,113.9,113.4c-138.5,138.3-138.5,362.6,0,501C219.2,730.1,413.2,743,547.6,666.5l301.9,301.4c43.6,43.6,76.9,14.9,104.2-12.4C981,928.3,1011.8,893,968.2,849.4z M524.5,522c-88.9,88.7-233,88.7-321.8,0c-88.9-88.7-88.9-232.6,0-321.3c88.9-88.7,233-88.7,321.8,0C613.4,289.4,613.4,433.3,524.5,522z"></path></svg><input placeholder="Search..." aria-label="Search" type="text" class="sc-kjKYmT iiRHzu search-input" value=""/></div><div class="sc-kMzELR kIqtpW scrollbar-container undefined"><ul role="menu" class="sc-YltrM fTlmpg"><li tabindex="0" depth="2" data-item-id="/paths/~1initialize/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Initialize detector and data acquisition</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1pedestal/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Collect dark current for the detector</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1start/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Start detector</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1wait_till_done/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Wait for acquisition done</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1trigger/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Send soft trigger to the detector</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1cancel/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Cancel running data collection</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1deactivate/post" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="post" class="sc-dmcoYd gxSVta operation-type post">post</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Prepare detector to turn off</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1config~1detector/put" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="put" class="sc-dmcoYd gxSVta operation-type put">put</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Change detector configuration</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1config~1detector/get" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="get" class="sc-dmcoYd gxSVta operation-type get">get</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Get detector configuration</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1config~1spot_finding/put" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="put" class="sc-dmcoYd gxSVta operation-type put">put</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Configure spot finding</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1config~1spot_finding/get" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="get" class="sc-dmcoYd gxSVta operation-type get">get</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Get data processing configuration</span></label></li><li tabindex="0" depth="2" data-item-id="/paths/~1config~1rad_int/put" role="menuitem" class="sc-imiRDh kIUuLW"><label class="sc-vIyEI gvinAL -depth2"><span type="put" class="sc-dmcoYd gxSVta operation-type put">put</span><span tabindex="0" width="calc(100% - 38px)" class="sc-bjUHJT fXgHFV">Configure radial integration</span></labelLine truncated
          m -673.67664,1221.6502 -231.2455,-231.24803 55.6165,
          -55.627 c 30.5891,-30.59485 56.1806,-55.627 56.8701,-55.627 0.6894,
          0 79.8637,78.60862 175.9427,174.68583 l 174.6892,174.6858 174.6892,
@@ -577,7 +577,7 @@ Changing detector will set detector to <code>Inactive</code> state and will requ
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Running in &quot;simulator&quot; mode - no detector present</p>
 </div></button></div><div><button class="sc-hsaIUA ideQht"><svg class="sc-eTNRI fWTllA" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">500<!-- --> </strong><div html="&lt;p&gt;Error encountered when trying to read status&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Error encountered when trying to read status</p>
-</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/detector/status</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/detector/status</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-36" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-37" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-37" aria-labelledby="react-tabs-36"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"state"</span>: <span class="token string">&quot;idle&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"powerchip"</span>: <span class="token string">&quot;on&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"server_version"</span>: <span class="token string">&quot;string&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"number_of_triggers_left"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"fpga_temp_degC"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0</span></div></li></ul><span class="token punctuation">]</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1plot~1bkg_estimate/post" data-section-id="/paths/~1plot~1bkg_estimate/post" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1plot~1bkg_estimate/post" aria-label="/paths/~1plot~1bkg_estimate/post"></a>Generate background estimate plot<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Mean intensity for d = 3 - 5 A per image; binning is configurable&lt;/p&gt;
+</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/detector/status</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/detector/status</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-36" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-37" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-37" aria-labelledby="react-tabs-36"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"state"</span>: <span class="token string">&quot;Idle&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"powerchip"</span>: <span class="token string">&quot;On&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"server_version"</span>: <span class="token string">&quot;string&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"number_of_triggers_left"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"fpga_temp_degC"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0</span></div></li></ul><span class="token punctuation">]</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1plot~1bkg_estimate/post" data-section-id="/paths/~1plot~1bkg_estimate/post" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1plot~1bkg_estimate/post" aria-label="/paths/~1plot~1bkg_estimate/post"></a>Generate background estimate plot<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Mean intensity for d = 3 - 5 A per image; binning is configurable&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS"><p>Mean intensity for d = 3 - 5 A per image; binning is configurable</p>
 </div></div><h5 class="sc-irLvIq cnGhhy">Request Body schema: <span class="sc-gYrqIg hJSqDi">application/json</span></h5><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS"></div><table class="sc-hIPBNq kHkWhD"><tbody><tr class="last "><td kind="field" title="binning" class="sc-hABBmJ sc-fHejqy cqoAxn hfWKVF"><span class="sc-ifyrAs hIHfpT"></span><span class="property-name">binning</span></td><td class="sc-blmEgr berbbf"><div><div><span class="sc-gUjWJS sc-kZOsHZ itHPsH iSyacY"></span><span class="sc-gUjWJS sc-iLXxbI itHPsH gfdSsP">integer</span><span class="sc-gUjWJS sc-iLXxbI itHPsH gfdSsP"> <!-- -->&lt;<!-- -->int64<!-- -->&gt;<!-- --> </span></div> <div><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div></div></div></td></tr></tbody></table><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Everything OK&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Everything OK</p>
@@ -635,25 +635,29 @@ Changing detector will set detector to <code>Inactive</code> state and will requ
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS"><p>Indexing rate per each of data files; useful for example for time resolved data</p>
 </div></div><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Everything OK&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Everything OK</p>
-</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/plot/indexing_rate_per_file</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/plot/indexing_rate_per_file</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-74" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-75" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-75" aria-labelledby="react-tabs-74"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"x"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"y"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1plot~1rad_int/get" data-section-id="/paths/~1plot~1rad_int/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1plot~1rad_int/get" aria-label="/paths/~1plot~1rad_int/get"></a>Generate radial integration profile<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Generate average radial integration profile&lt;/p&gt;
+</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/plot/indexing_rate_per_file</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/plot/indexing_rate_per_file</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-74" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-75" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-75" aria-labelledby="react-tabs-74"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"x"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"y"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1plot~1resolution_estimate_histogram/get" data-section-id="/paths/~1plot~1resolution_estimate_histogram/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1plot~1resolution_estimate_histogram/get" aria-label="/paths/~1plot~1resolution_estimate_histogram/get"></a>Generate resolution estimate histogram<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Generate histogram of crystal resolutions from 1.0 to 5.0 A based on ML model&lt;/p&gt;
+" class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS"><p>Generate histogram of crystal resolutions from 1.0 to 5.0 A based on ML model</p>
+</div></div><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Everything OK&lt;/p&gt;
+" class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Everything OK</p>
+</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/plot/resolution_estimate_histogram</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/plot/resolution_estimate_histogram</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-76" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-77" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-77" aria-labelledby="react-tabs-76"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"x"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"y"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1plot~1rad_int/get" data-section-id="/paths/~1plot~1rad_int/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1plot~1rad_int/get" aria-label="/paths/~1plot~1rad_int/get"></a>Generate radial integration profile<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Generate average radial integration profile&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS"><p>Generate average radial integration profile</p>
 </div></div><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Everything OK&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Everything OK</p>
-</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/plot/rad_int</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/plot/rad_int</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-76" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-77" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-77" aria-labelledby="react-tabs-76"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"x"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"y"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1plot~1rad_int_per_file/get" data-section-id="/paths/~1plot~1rad_int_per_file/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1plot~1rad_int_per_file/get" aria-label="/paths/~1plot~1rad_int_per_file/get"></a>Generate radial integration profiles per file<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Radial integration plots for both the whole dataset and per file; useful for time-resolved measurements&lt;/p&gt;
+</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/plot/rad_int</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/plot/rad_int</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-78" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-79" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-79" aria-labelledby="react-tabs-78"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"x"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"y"</span>: <button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1plot~1rad_int_per_file/get" data-section-id="/paths/~1plot~1rad_int_per_file/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1plot~1rad_int_per_file/get" aria-label="/paths/~1plot~1rad_int_per_file/get"></a>Generate radial integration profiles per file<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Radial integration plots for both the whole dataset and per file; useful for time-resolved measurements&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS"><p>Radial integration plots for both the whole dataset and per file; useful for time-resolved measurements</p>
 </div></div><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Everything OK&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Everything OK</p>
-</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/plot/rad_int_per_file</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/plot/rad_int_per_file</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-78" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-79" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-79" aria-labelledby="react-tabs-78"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable "><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable collapsed"><span class="property token string">"title"</span>: <span class="token string">&quot;string&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"plot"</span>: <button class="collapser" aria-label="expand"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable collapsed"><span class="property token string">"x"</span>: <button class="collapser" aria-label="expand"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"y"</span>: <button class="collapser" aria-label="expand"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span></div></li></ul><span class="token punctuation">}</span></div></li></ul><span class="token punctuation">}</span></div></li></ul><span class="token punctuation">]</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1statistics~1data_collection/get" data-section-id="/paths/~1statistics~1data_collection/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1statistics~1data_collection/get" aria-label="/paths/~1statistics~1data_collection/get"></a>Get data collection statistics<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Results of the last data collection&lt;/p&gt;
+</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/plot/rad_int_per_file</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/plot/rad_int_per_file</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-80" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-81" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-81" aria-labelledby="react-tabs-80"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable "><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable collapsed"><span class="property token string">"title"</span>: <span class="token string">&quot;string&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"plot"</span>: <button class="collapser" aria-label="expand"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable collapsed"><span class="property token string">"x"</span>: <button class="collapser" aria-label="expand"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"y"</span>: <button class="collapser" aria-label="expand"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable collapsed"><span class="token number">0.1</span></div></li></ul><span class="token punctuation">]</span></div></li></ul><span class="token punctuation">}</span></div></li></ul><span class="token punctuation">}</span></div></li></ul><span class="token punctuation">]</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1statistics~1data_collection/get" data-section-id="/paths/~1statistics~1data_collection/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1statistics~1data_collection/get" aria-label="/paths/~1statistics~1data_collection/get"></a>Get data collection statistics<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Results of the last data collection&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS"><p>Results of the last data collection</p>
 </div></div><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Everything OK&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Everything OK</p>
 </div></button></div><div><button class="sc-hsaIUA ifZPCr" disabled=""><strong class="sc-gWQvRS ePkkgX">404<!-- --> </strong><div html="&lt;p&gt;No data collection performed so far&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>No data collection performed so far</p>
-</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/statistics/data_collection</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/statistics/data_collection</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-80" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-81" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-81" aria-labelledby="react-tabs-80"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"file_prefix"</span>: <span class="token string">&quot;string&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"images_expected"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"images_collected"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"images_sent"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"max_image_number_sent"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"collection_efficiency"</span>: <span class="token number">1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"compression_ratio"</span>: <span class="token number">5.3</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"cancelled"</span>: <span class="token boolean">true</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"max_receiver_delay"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"indexing_rate"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"detector_width"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"detector_height"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"detector_pixel_depth"</span>: <span class="token number">2</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"bkg_estimate"</span>: <span class="token number">0.1</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1statistics~1calibration/get" data-section-id="/paths/~1statistics~1calibration/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1statistics~1calibration/get" aria-label="/paths/~1statistics~1calibration/get"></a>Get calibration statistics<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Statistics are provided for each module/storage cell separately&lt;/p&gt;
+</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/statistics/data_collection</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/statistics/data_collection</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-82" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-83" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-83" aria-labelledby="react-tabs-82"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"file_prefix"</span>: <span class="token string">&quot;string&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"images_expected"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"images_collected"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"images_sent"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"max_image_number_sent"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"collection_efficiency"</span>: <span class="token number">1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"compression_ratio"</span>: <span class="token number">5.3</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"cancelled"</span>: <span class="token boolean">true</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"max_receiver_delay"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"indexing_rate"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"detector_width"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"detector_height"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"detector_pixel_depth"</span>: <span class="token number">2</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"bkg_estimate"</span>: <span class="token number">0.1</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1statistics~1calibration/get" data-section-id="/paths/~1statistics~1calibration/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1statistics~1calibration/get" aria-label="/paths/~1statistics~1calibration/get"></a>Get calibration statistics<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Statistics are provided for each module/storage cell separately&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS"><p>Statistics are provided for each module/storage cell separately</p>
 </div></div><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Everything OK&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Everything OK</p>
-</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/statistics/calibration</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/statistics/calibration</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-82" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-83" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-83" aria-labelledby="react-tabs-82"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable "><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable collapsed"><span class="property token string">"module_number"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"storage_cell_number"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"pedestal_g0_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"pedestal_g1_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"pedestal_g2_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"gain_g0_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"gain_g1_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"gain_g2_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"masked_pixels"</span>: <span class="token number">0</span></div></li></ul><span class="token punctuation">}</span></div></li></ul><span class="token punctuation">]</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1preview~1image.jpeg/get" data-section-id="/paths/~1preview~1image.jpeg/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1preview~1image.jpeg/get" aria-label="/paths/~1preview~1image.jpeg/get"></a>Get last preview image in JPEG format<!-- --> </h2><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Preview image&lt;/p&gt;
+</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/statistics/calibration</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/statistics/calibration</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-84" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-85" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-85" aria-labelledby="react-tabs-84"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button><button> Expand all </button><button> Collapse all </button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">[</span><span class="ellipsis"></span><ul class="array collapsible"><li><div class="hoverable "><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable collapsed"><span class="property token string">"module_number"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"storage_cell_number"</span>: <span class="token number">0</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"pedestal_g0_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"pedestal_g1_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"pedestal_g2_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"gain_g0_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"gain_g1_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"gain_g2_mean"</span>: <span class="token number">0.1</span><span class="token punctuation">,</span></div></li><li><div class="hoverable collapsed"><span class="property token string">"masked_pixels"</span>: <span class="token number">0</span></div></li></ul><span class="token punctuation">}</span></div></li></ul><span class="token punctuation">]</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1preview~1image.jpeg/get" data-section-id="/paths/~1preview~1image.jpeg/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1preview~1image.jpeg/get" aria-label="/paths/~1preview~1image.jpeg/get"></a>Get last preview image in JPEG format<!-- --> </h2><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Preview image&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Preview image</p>
 </div></button></div><div><button class="sc-hsaIUA ifZPCr" disabled=""><strong class="sc-gWQvRS ePkkgX">404<!-- --> </strong><div html="&lt;p&gt;No preview image recorded so far&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>No preview image recorded so far</p>
@@ -671,11 +675,11 @@ Changing detector will set detector to <code>Inactive</code> state and will requ
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Input parsing or validation error</p>
 </div></button></div><div><button class="sc-hsaIUA ideQht"><svg class="sc-eTNRI fWTllA" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">500<!-- --> </strong><div html="&lt;p&gt;Error within Jungfraujoch code - see output message.&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Error within Jungfraujoch code - see output message.</p>
-</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="put" class="sc-jYnQyy hyHSPQ http-verb put">put</span><span class="sc-fYrVWQ gllLir">/preview/jpeg_settings</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/preview/jpeg_settings</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Request samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="react-tabs__tab react-tabs__tab--selected" role="tab" id="react-tabs-84" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-85" tabindex="0" data-rttab="true">Payload</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-85" aria-labelledby="react-tabs-84"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"saturation"</span>: <span class="token number">65535</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"show_spots"</span>: <span class="token boolean">true</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"jpeg_quality"</span>: <span class="token number">100</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-error react-tabs__tab--selected" role="tab" id="react-tabs-86" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-87" tabindex="0" data-rttab="true">500</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-87" aria-labelledby="react-tabs-86"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"msg"</span>: <span class="token string">&quot;Detector in wrong state&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"reason"</span>: <span class="token string">&quot;WrongDAQState&quot;</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1preview~1jpeg_settings/get" data-section-id="/paths/~1preview~1jpeg_settings/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1preview~1jpeg_settings/get" aria-label="/paths/~1preview~1jpeg_settings/get"></a>Get JPEG rendering configuration<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Can be done anytime&lt;/p&gt;
+</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="put" class="sc-jYnQyy hyHSPQ http-verb put">put</span><span class="sc-fYrVWQ gllLir">/preview/jpeg_settings</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/preview/jpeg_settings</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Request samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="react-tabs__tab react-tabs__tab--selected" role="tab" id="react-tabs-86" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-87" tabindex="0" data-rttab="true">Payload</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-87" aria-labelledby="react-tabs-86"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"saturation"</span>: <span class="token number">65535</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"show_spots"</span>: <span class="token boolean">true</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"jpeg_quality"</span>: <span class="token number">100</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-error react-tabs__tab--selected" role="tab" id="react-tabs-88" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-89" tabindex="0" data-rttab="true">500</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-89" aria-labelledby="react-tabs-88"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"msg"</span>: <span class="token string">&quot;Detector in wrong state&quot;</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"reason"</span>: <span class="token string">&quot;WrongDAQState&quot;</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1preview~1jpeg_settings/get" data-section-id="/paths/~1preview~1jpeg_settings/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1preview~1jpeg_settings/get" aria-label="/paths/~1preview~1jpeg_settings/get"></a>Get JPEG rendering configuration<!-- --> </h2><div class="sc-eYFTNc dZbpPF"><div html="&lt;p&gt;Can be done anytime&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS"><p>Can be done anytime</p>
 </div></div><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Everything OK&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Everything OK</p>
-</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/preview/jpeg_settings</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/preview/jpeg_settings</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-88" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-89" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-89" aria-labelledby="react-tabs-88"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"saturation"</span>: <span class="token number">65535</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"show_spots"</span>: <span class="token boolean">true</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"jpeg_quality"</span>: <span class="token number">100</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1preview~1image.tiff/get" data-section-id="/paths/~1preview~1image.tiff/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1preview~1image.tiff/get" aria-label="/paths/~1preview~1image.tiff/get"></a>Get last preview image in TIFF format<!-- --> </h2><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Preview image&lt;/p&gt;
+</div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/preview/jpeg_settings</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/preview/jpeg_settings</div></div></div></div></div><div><h3 class="sc-kFCroH klfnyk"> <!-- -->Response samples<!-- --> </h3><div class="sc-cyZbeP jSWvqu" data-rttabs="true"><ul class="react-tabs__tab-list" role="tablist"><li class="tab-success react-tabs__tab--selected" role="tab" id="react-tabs-90" aria-selected="true" aria-disabled="false" aria-controls="react-tabs-91" tabindex="0" data-rttab="true">200</li></ul><div class="react-tabs__tab-panel react-tabs__tab-panel--selected" role="tabpanel" id="react-tabs-91" aria-labelledby="react-tabs-90"><div><div class="sc-cPtzlb jBjImi"><span class="sc-bCvmQg eTZsJr">Content type</span><div class="sc-dQmiwx jCmKdj">application/json</div></div><div class="sc-hVcFVo jeLSWq"><div class="sc-cSxRuM fOJBdW"><div class="sc-gjLLEI iwAAMv"><button><div class="sc-jdHILj krcPXE">Copy</div></button></div><div class="sc-iKOmoZ WVNwY sc-jMbVJB DqFKH"><div class="redoc-json"><code><button class="collapser" aria-label="collapse"></button><span class="token punctuation">{</span><span class="ellipsis"></span><ul class="obj collapsible"><li><div class="hoverable "><span class="property token string">"saturation"</span>: <span class="token number">65535</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"show_spots"</span>: <span class="token boolean">true</span><span class="token punctuation">,</span></div></li><li><div class="hoverable "><span class="property token string">"jpeg_quality"</span>: <span class="token number">100</span></div></li></ul><span class="token punctuation">}</span></code></div></div></div></div></div></div></div></div></div></div></div><div id="/paths/~1preview~1image.tiff/get" data-section-id="/paths/~1preview~1image.tiff/get" class="sc-eDLKkx cSNAXN"><div class="sc-iBdnpw fsPUig"><div class="sc-hLQSwg gikxZY"><h2 class="sc-qZrbh gwJLUj"><a class="sc-csKJxZ fNhImz" href="#/paths/~1preview~1image.tiff/get" aria-label="/paths/~1preview~1image.tiff/get"></a>Get last preview image in TIFF format<!-- --> </h2><div><h3 class="sc-fYitVF duKVDl">Responses</h3><div><button class="sc-hsaIUA fIqGlH"><svg class="sc-eTNRI hUWsvg" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg><strong class="sc-gWQvRS ePkkgX">200<!-- --> </strong><div html="&lt;p&gt;Preview image&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>Preview image</p>
 </div></button></div><div><button class="sc-hsaIUA ifZPCr" disabled=""><strong class="sc-gWQvRS ePkkgX">404<!-- --> </strong><div html="&lt;p&gt;No preview image recorded so far&lt;/p&gt;
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>No preview image recorded so far</p>
@@ -687,7 +691,7 @@ Changing detector will set detector to <code>Inactive</code> state and will requ
 " class="sc-iKOmoZ sc-cCzLxZ WVNwY VEBGS sc-ckdEwu LxEPk"><p>No preview image recorded so far</p>
 </div></button></div></div></div><div class="sc-jTQCzO sc-gLLuof imiXRU jGdkPR"><div class="sc-bPrlCs cIsduN"><button class="sc-GkLId bclCVA"><span type="get" class="sc-jYnQyy eIFDdZ http-verb get">get</span><span class="sc-fYrVWQ gllLir">/preview/calibration.tiff</span><svg class="sc-eTNRI exoGJA" style="margin-right:-25px" version="1.1" viewBox="0 0 24 24" x="0" xmlns="http://www.w3.org/2000/svg" y="0" aria-hidden="true"><polygon points="17.3 8.3 12 13.6 6.7 8.3 5.3 9.7 12 16.4 18.7 9.7 "></polygon></svg></button><div aria-hidden="true" class="sc-eGgGjL hsEiws"><div class="sc-fnpiog jerStl"><div html="" class="sc-iKOmoZ sc-cCzLxZ WVNwY jaVotg"></div><div tabindex="0" role="button"><div class="sc-lkDHyp etvaCd"><span></span>/preview/calibration.tiff</div></div></div></div></div></div></div></div></div><div class="sc-juusvx bsunyy"></div></div></div>
      <script>
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If not provided count time will be set to maximum value for a given frame time.","Line truncated
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      var container = document.getElementById('redoc');
      Redoc.hydrate(__redoc_state, container);
@@ -21,7 +21,7 @@ MESSAGE(STATUS "Git date: ${GIT_DATE}")

 CONFIGURE_FILE("${CMAKE_CURRENT_SOURCE_DIR}/GitInfo.cpp.in" "${CMAKE_CURRENT_BINARY_DIR}/GitInfo.cpp" @ONLY)

-ADD_LIBRARY( CommonFunctions STATIC
+ADD_LIBRARY( JFJochCommon STATIC
        Logger.cpp Logger.h
        Coord.cpp Coord.h
        DiffractionExperiment.cpp DiffractionExperiment.h
@@ -45,16 +45,16 @@ ADD_LIBRARY( CommonFunctions STATIC
        ../fpga/include/jfjoch_fpga.h
        ZMQWrappers.cpp ZMQWrappers.h)

-TARGET_LINK_LIBRARIES(CommonFunctions Compression JFCalibration "$<BUILD_INTERFACE:libzmq-static>" -lrt)
+TARGET_LINK_LIBRARIES(JFJochCommon Compression JFCalibration "$<BUILD_INTERFACE:libzmq-static>" -lrt)

 IF (CMAKE_CUDA_COMPILER)
-    TARGET_SOURCES(CommonFunctions PRIVATE CUDAWrapper.cu )
-    TARGET_LINK_LIBRARIES(CommonFunctions ${CUDART_LIBRARY} ${CMAKE_DL_LIBS} rt)
+    TARGET_SOURCES(JFJochCommon PRIVATE CUDAWrapper.cu )
+    TARGET_LINK_LIBRARIES(JFJochCommon ${CUDART_LIBRARY} ${CMAKE_DL_LIBS} rt)
 ENDIF()

 IF(HAS_NUMAIF AND HAS_NUMA_H AND NUMA_LIBRARY)
-    TARGET_COMPILE_DEFINITIONS(CommonFunctions PUBLIC JFJOCH_USE_NUMA)
-    TARGET_LINK_LIBRARIES(CommonFunctions ${NUMA_LIBRARY})
+    TARGET_COMPILE_DEFINITIONS(JFJochCommon PUBLIC JFJOCH_USE_NUMA)
+    TARGET_LINK_LIBRARIES(JFJochCommon ${NUMA_LIBRARY})
    MESSAGE(STATUS "NUMA memory/CPU pinning enabled")
 ELSE()
    MESSAGE(WARNING "NUMA memory/CPU pinning disabled")
@@ -1147,3 +1147,12 @@ std::chrono::nanoseconds DiffractionExperiment::GetDetectorDelay() const {
 const DetectorSetup &DiffractionExperiment::GetDetectorSetup() const {
    return detector;
 }
+
+DiffractionExperiment &DiffractionExperiment::NeuralNetModelPath(const std::string &input) {
+    neural_net_model_path = input;
+    return *this;
+}
+
+std::string DiffractionExperiment::GetNeuralNetModelPath() const {
+    return neural_net_model_path;
+}
@@ -91,6 +91,8 @@ class DiffractionExperiment {

    uint64_t series_id;

+    std::string neural_net_model_path;
+
    // Dataset settings
    struct {
        int64_t images_per_trigger;
@@ -197,6 +199,7 @@ public:
    DiffractionExperiment& IncrementSeriesID();
    DiffractionExperiment& ROISummation(const std::optional<ROIRectangle>& input);
    DiffractionExperiment& ConversionOnFPGA(bool input);
+    DiffractionExperiment& NeuralNetModelPath(const std::string& input);

    void FillMessage(StartMessage &message) const;

@@ -343,6 +346,7 @@ public:
    bool IsConversionOnFPGA() const;

    const DetectorSetup& GetDetectorSetup() const;
+    std::string GetNeuralNetModelPath() const;
 };

 inline int64_t CalculateStride(const std::chrono::microseconds &frame_time, const std::chrono::microseconds &preview_time) {
@@ -7,15 +7,17 @@
 #include <cstddef>
 #include <vector>
 #include <mutex>
+
 #include "Plot.h"
+#include "../common/JFJochException.h"

 template <class T>
-class Histogram {
+class SetAverage {
    std::vector<T> sum;
    std::vector<uint64_t> count;
    std::mutex m;
 public:
-    explicit Histogram(size_t bins) : sum(bins), count(bins) {}
+    explicit SetAverage(size_t bins) : sum(bins), count(bins) {}
    void Add(size_t bin, T val) {
        std::unique_lock<std::mutex> ul(m);

@@ -42,5 +44,39 @@ public:
    }
 };

+class FloatHistogram {
+    std::vector<uint64_t> count;
+    std::mutex m;
+    float min;
+    float max;
+    float spacing;
+public:
+    explicit FloatHistogram(size_t bins, float in_min, float in_max) : count(bins), min(in_min), max(in_max) {
+        if (bins == 0)
+            throw JFJochException(JFJochExceptionCategory::InputParameterBelowMin, "FloatHistogram neds to have non-zero bins");
+        spacing = (max - min) / bins;
+    }
+    void Add(float val) {
+        std::unique_lock<std::mutex> ul(m);
+
+        size_t bin = (val - min) / spacing;
+
+        if (bin < count.size())
+            count[bin] += 1;
+    }
+
+    Plot GetPlot() {
+        std::unique_lock<std::mutex> ul(m);
+
+        Plot ret;
+        ret.x.resize(count.size());
+        ret.y.resize(count.size());
+        for (int i = 0; i < count.size(); i++) {
+            ret.x[i] = min + (i + 0.5f) * spacing;
+            ret.y[i] = static_cast<float>(count[i]);
+        }
+        return ret;
+    }
+};

 #endif //JUNGFRAUJOCH_HISTOGRAM_H
@@ -8,7 +8,8 @@
 #include <string>

 enum class PlotType {BkgEstimate, RadInt, SpotCount, IndexingRate, IndexingRatePerFile, SaturatedPixels,
-                     ErrorPixels, ImageCollectionEfficiency, ReceiverDelay, StrongPixels, ROISum};
+                     ErrorPixels, ImageCollectionEfficiency, ReceiverDelay, StrongPixels, ROISum,
+                     ResEstimation};

 struct PlotRequest {
    PlotType type;
@@ -2,6 +2,6 @@ ADD_SUBDIRECTORY(slsDetectorPackage)
 INSTALL(TARGETS sls_detector_put sls_detector_get RUNTIME)

 ADD_LIBRARY(JFJochDetector STATIC DetectorWrapper.cpp DetectorWrapper.h)
-TARGET_LINK_LIBRARIES(JFJochDetector CommonFunctions slsSupportShared slsDetectorShared)
+TARGET_LINK_LIBRARIES(JFJochDetector JFJochCommon slsSupportShared slsDetectorShared)


@@ -1,24 +1,24 @@
 FIND_PACKAGE(TIFF COMPONENTS CXX REQUIRED)
 FIND_PACKAGE(JPEG REQUIRED)

-ADD_LIBRARY(ExportImage STATIC
+ADD_LIBRARY(JFJochImageExport STATIC
        WriteTIFF.cpp WriteTIFF.h
        WriteJPEG.cpp WriteJPEG.h
        PreviewImage.cpp PreviewImage.h)

-TARGET_LINK_LIBRARIES(ExportImage PUBLIC CommonFunctions)
+TARGET_LINK_LIBRARIES(JFJochImageExport PUBLIC JFJochCommon)

 IF((EXISTS ${TIFF_INCLUDE_DIR}/tiffio.hxx) AND (EXISTS ${TIFF_INCLUDE_DIR}/tiffio.h))
-    TARGET_INCLUDE_DIRECTORIES(ExportImage PRIVATE ${TIFF_INCLUDE_DIR})
-    TARGET_LINK_LIBRARIES(ExportImage PUBLIC ${TIFF_LIBRARIES})
+    TARGET_INCLUDE_DIRECTORIES(JFJochImageExport PRIVATE ${TIFF_INCLUDE_DIR})
+    TARGET_LINK_LIBRARIES(JFJochImageExport PUBLIC ${TIFF_LIBRARIES})
    MESSAGE(STATUS "TIFF headers present and library included")
 ELSE()
    MESSAGE(FATAL_ERROR "TIFF headers tiffio.h and tiffio.hxx not present")
 ENDIF()

 IF (EXISTS ${JPEG_INCLUDE_DIR}/jpeglib.h)
-    TARGET_INCLUDE_DIRECTORIES(ExportImage PRIVATE ${JPEG_INCLUDE_DIR})
-    TARGET_LINK_LIBRARIES(ExportImage PUBLIC ${JPEG_LIBRARIES})
+    TARGET_INCLUDE_DIRECTORIES(JFJochImageExport PRIVATE ${JPEG_INCLUDE_DIR})
+    TARGET_LINK_LIBRARIES(JFJochImageExport PUBLIC ${JPEG_LIBRARIES})
    MESSAGE(STATUS "JPEG headers present and library included")
 ELSE()
    MESSAGE(FATAL_ERROR "JPEG header jpeglib.h not found")
@@ -1,4 +1,4 @@
-ADD_LIBRARY( HLSSimulation STATIC
+ADD_LIBRARY( JFJochHLSSimulation STATIC
        jf_conversion.cpp
        data_collection_fsm.cpp
        timer.cpp
@@ -30,9 +30,9 @@ ADD_LIBRARY( HLSSimulation STATIC
        spot_finder_connectivity.cpp
        spot_finder_mask.cpp)

-TARGET_INCLUDE_DIRECTORIES(HLSSimulation PUBLIC ../include)
-TARGET_LINK_LIBRARIES(HLSSimulation CommonFunctions)
-TARGET_COMPILE_DEFINITIONS(HLSSimulation PUBLIC -DJFJOCH_HLS_NOSYNTH)
+TARGET_INCLUDE_DIRECTORIES(JFJochHLSSimulation PUBLIC ../include)
+TARGET_LINK_LIBRARIES(JFJochHLSSimulation JFJochCommon)
+TARGET_COMPILE_DEFINITIONS(JFJochHLSSimulation PUBLIC -DJFJOCH_HLS_NOSYNTH)

 ADD_EXECUTABLE(frame_summation_tb frame_summation_tb.cpp)
 TARGET_LINK_LIBRARIES(frame_summation_tb HLSSimulation)
@@ -1,6 +1,6 @@
-ADD_LIBRARY(JungfraujochDevice STATIC JungfraujochDevice.cpp JungfraujochDevice.h ../include/jfjoch_fpga.h)
+ADD_LIBRARY(JFJochDevice STATIC JungfraujochDevice.cpp JungfraujochDevice.h ../include/jfjoch_fpga.h)

-TARGET_LINK_LIBRARIES(JungfraujochDevice CommonFunctions)
+TARGET_LINK_LIBRARIES(JFJochDevice JFJochCommon)

 ADD_EXECUTABLE(jfjoch_pcie_status jfjoch_pcie_status.cpp)
 TARGET_LINK_LIBRARIES(jfjoch_pcie_status JungfraujochDevice )
@@ -24,4 +24,4 @@ ADD_LIBRARY(ImagePusher STATIC

 FIND_PACKAGE(OpenSSL REQUIRED)

-TARGET_LINK_LIBRARIES(ImagePusher CBORStream2FrameSerialize CommonFunctions Compression OpenSSL::Crypto)
+TARGET_LINK_LIBRARIES(ImagePusher CBORStream2FrameSerialize JFJochCommon Compression OpenSSL::Crypto)
@@ -89,6 +89,8 @@ struct DataMessage {
    float beam_center_y;
    float incident_energy;

+    std::optional<float> resolution_estimation;
+
    std::optional<int64_t> roi_sum;
 };

@@ -15,7 +15,8 @@ export enum PlotType {
    ERROR_PIXELS,
    RECEIVER_DELAY,
    STRONG_PIXELS,
-    ROI_SUM
+    ROI_SUM,
+    RES_ESTIMATION
 }

 type MyProps = {
@@ -120,6 +121,13 @@ class DataProcessingPlot extends Component<MyProps, MyState> {
                        this.setState({connection_error: true});
                    });
                break;
+            case PlotType.RES_ESTIMATION:
+                DefaultService.getPlotResolutionEstimateHistogram()
+                    .then(data => this.setState({plot: data, connection_error: false}))
+                    .catch(error => {
+                        this.setState({connection_error: true});
+                    });
+                break;
        }
    }
    componentDidMount() {
@@ -44,13 +44,13 @@ class DataProcessingPlots extends Component<MyProps, MyState> {
                this.setState({type: PlotType.SPOT_COUNT, xlabel: "Image number", ylabel: "Spot count" });
                break;
            case "3":
-                this.setState({type: PlotType.RAD_INT, xlabel: "Q [A<sup>-1</sup>]", ylabel: "Photon count"});
+                this.setState({type: PlotType.RAD_INT, xlabel: "Q [&#8491;<sup>-1</sup>]", ylabel: "Photon count"});
                break;
            case "4":
                this.setState({type: PlotType.INDEXING_RATE_PER_FILE, xlabel: "File number", ylabel: "Indexing rate"});
                break;
            case "5":
-                this.setState({type: PlotType.RAD_INT_PER_FILE, xlabel: "Q [A^-1]", ylabel: "Photon count"});
+                this.setState({type: PlotType.RAD_INT_PER_FILE, xlabel: "Q [&#8491;<sup>-1</sup>]", ylabel: "Photon count"});
                break;
            case "6":
                this.setState({type: PlotType.SATURATED_PIXELS, xlabel: "Image number", ylabel: "Count"});
@@ -70,6 +70,9 @@ class DataProcessingPlots extends Component<MyProps, MyState> {
            case "11":
                this.setState({type: PlotType.ROI_SUM, xlabel: "Image number", ylabel: "Photon count"});
                break;
+            case "12":
+                this.setState({type: PlotType.RES_ESTIMATION, xlabel: "Resolution [&#8491;]", ylabel: "Number of crystals"});
+                break;
        }
    };

@@ -94,6 +97,7 @@ class DataProcessingPlots extends Component<MyProps, MyState> {
                            <MenuItem value={2}>Spot count</MenuItem>
                            <MenuItem value={3}>Azimuthal integration profile</MenuItem>
                            <MenuItem value={11}>ROI area sum</MenuItem>
+                            <MenuItem value={12}>Crystal resolution histogram</MenuItem>
                            <MenuItem value={4}>Indexing rate (per file)</MenuItem>
                            <MenuItem value={5}>Azimuthal integration profile (per file)</MenuItem>
                            <MenuItem value={6}>Saturated pixels</MenuItem>
@@ -544,6 +544,19 @@ export class DefaultService {
        });
    }

+    /**
+     * Generate resolution estimate histogram
+     * Generate histogram of crystal resolutions from 1.0 to 5.0 A based on ML model
+     * @returns plot Everything OK
+     * @throws ApiError
+     */
+    public static getPlotResolutionEstimateHistogram(): CancelablePromise<plot> {
+        return __request(OpenAPI, {
+            method: 'GET',
+            url: '/plot/resolution_estimate_histogram',
+        });
+    }
+
    /**
     * Generate radial integration profile
     * Generate average radial integration profile
@@ -1,30 +1,30 @@
-ADD_LIBRARY(ImageAnalysis STATIC
+ADD_LIBRARY(JFJochImageAnalysis STATIC
        CrystalLattice.cpp CrystalLattice.h
        IndexerWrapper.cpp IndexerWrapper.h
        AzimuthalIntegrationMapping.cpp AzimuthalIntegrationMapping.h
        StrongPixelSet.cpp StrongPixelSet.h AzimuthalIntegrationProfile.cpp AzimuthalIntegrationProfile.h
        SpotFindingSettings.h)

-TARGET_LINK_LIBRARIES(ImageAnalysis CommonFunctions)
+TARGET_LINK_LIBRARIES(JFJochImageAnalysis JFJochCommon)

-TARGET_INCLUDE_DIRECTORIES(ImageAnalysis PUBLIC fast-feedback-indexer/eigen)
+TARGET_INCLUDE_DIRECTORIES(JFJochImageAnalysis PUBLIC fast-feedback-indexer/eigen)

 IF (CMAKE_CUDA_COMPILER)
-    TARGET_SOURCES(ImageAnalysis PRIVATE
+    TARGET_SOURCES(JFJochImageAnalysis PRIVATE
            fast-feedback-indexer/indexer/src/indexer.cpp
            fast-feedback-indexer/indexer/src/indexer_gpu.cu
            fast-feedback-indexer/indexer/src/log.cpp)

-    TARGET_SOURCES(ImageAnalysis PUBLIC
+    TARGET_SOURCES(JFJochImageAnalysis PUBLIC
            fast-feedback-indexer/indexer/src/ffbidx/indexer.h
            fast-feedback-indexer/indexer/src/ffbidx/indexer_gpu.h
            fast-feedback-indexer/indexer/src/ffbidx/refine.h
            fast-feedback-indexer/indexer/src/ffbidx/log.h
            fast-feedback-indexer/indexer/src/ffbidx/exception.h)

-    TARGET_INCLUDE_DIRECTORIES(ImageAnalysis PUBLIC fast-feedback-indexer/indexer/src/)
+    TARGET_INCLUDE_DIRECTORIES(JFJochImageAnalysis PUBLIC fast-feedback-indexer/indexer/src/)

-    TARGET_LINK_LIBRARIES(ImageAnalysis ${CUDART_LIBRARY} ${CMAKE_DL_LIBS} rt)
+    TARGET_LINK_LIBRARIES(JFJochImageAnalysis ${CUDART_LIBRARY} ${CMAKE_DL_LIBS} rt)
 ELSE()
    MESSAGE(WARNING "CUDA is strongly recommended for image analysis." )
 ENDIF()
@@ -23,9 +23,7 @@ struct IndexingResult {

 class IndexerWrapper {
 #ifdef JFJOCH_USE_CUDA
-    fast_feedback::config_runtime<float> crt{
-            .num_sample_points = 32768
-    };
+    fast_feedback::config_runtime<float> crt{};
    fast_feedback::config_persistent<float> cpers{
            .max_output_cells = 4,
            .max_input_cells = 1,
@@ -11,7 +11,7 @@ ADD_LIBRARY(JFJochReceiver STATIC
        PreviewCounter.cpp
        PreviewCounter.h)

-TARGET_LINK_LIBRARIES(JFJochReceiver ImagePusher ImageAnalysis JungfraujochAcqusitionDevice CommonFunctions HLSSimulation ExportImage)
+TARGET_LINK_LIBRARIES(JFJochReceiver ImagePusher JFJochImageAnalysis JFJochAcquisitionDevice JFJochCommon JFJochHLSSimulation JFJochImageExport JFJochResonet)

 ADD_EXECUTABLE(jfjoch_action_test jfjoch_action_test.cpp)
 TARGET_LINK_LIBRARIES(jfjoch_action_test JFJochReceiver)
@@ -7,6 +7,7 @@
 #include "../image_analysis/IndexerWrapper.h"
 #include "../common/DiffractionGeometry.h"
 #include "ImageMetadata.h"
+#include "../resonet/NeuralNetResPredictor.h"

 inline std::string time_UTC(const std::chrono::time_point<std::chrono::system_clock> &input) {
    auto time_ms = std::chrono::duration_cast<std::chrono::milliseconds>(input.time_since_epoch()).count();
@@ -269,6 +270,19 @@ void JFJochReceiver::FrameTransformationThread() {
        Cancel(e);
    }

+    std::unique_ptr<NeuralNetResPredictor> neural_net_predictor;
+
+#ifdef JFJOCH_USE_TORCH
+    if (!experiment.GetNeuralNetModelPath().empty()) {
+        try {
+            neural_net_predictor = std::make_unique<NeuralNetResPredictor>(experiment);
+        } catch (const JFJochException &e) {
+            logger.Warning("Torch error {}", e.what());
+            neural_net_predictor = nullptr;
+        }
+    }
+#endif
+
    FrameTransformation transformation(experiment);
    std::vector<char> writer_buffer(experiment.GetMaxCompressedSize());

@@ -382,6 +396,14 @@ void JFJochReceiver::FrameTransformationThread() {
            if (experiment.GetROISummation())
                message.roi_sum = transformation.CalculateROISum(experiment.GetROISummation().value());

+            if (neural_net_predictor) {
+                try {
+                    message.resolution_estimation = neural_net_predictor->Inference(transformation.GetImage());
+                } catch (const std::exception &e) {
+                    logger.ErrorException(e);
+                    message.resolution_estimation.reset();
+                }
+            }
            plots.Add(message, image_number % experiment.GetDataFileCount(), az_int_profile_image);

            message.image = transformation.GetCompressedImage();
@@ -603,8 +625,8 @@ JFJochReceiverStatus JFJochReceiver::GetStatus() const {
    };
 }

-std::string JFJochReceiver::GetTIFF(bool calibration) const {
-    if (calibration)
+std::string JFJochReceiver::GetTIFF(bool calibration_run) const {
+    if (calibration_run)
        return preview_image.GenerateTIFFDioptas();
    else
        return preview_image.GenerateTIFF();
@@ -20,8 +20,6 @@
 #include "../common/ThreadSafeFIFO.h"
 #include "../frame_serialize/ZMQStream2PreviewPublisher.h"
 #include "../common/NUMAHWPolicy.h"
-#include "../common/StatusVector.h"
-#include "../common/Histogram.h"

 #include "../image_analysis/StrongPixelSet.h"
 #include "../image_analysis/AzimuthalIntegrationMapping.h"
@@ -6,7 +6,7 @@ JFJochReceiverPlots::JFJochReceiverPlots(const DiffractionExperiment &experiment
                                         const AzimuthalIntegrationMapping &mapping)
        : indexing_solution_per_file(experiment.GetDataFileCount()),
          default_binning(experiment.GetSpotFindingBin()),
-          rad_int_profile(mapping) {
+          rad_int_profile(mapping), resolution_estimation(50, 1.0, 5.0) {
    for (int i = 0; i < experiment.GetDataFileCount(); i++)
        rad_int_profile_per_file.emplace_back(mapping);
 }
@@ -26,6 +26,8 @@ void JFJochReceiverPlots::Add(const DataMessage &msg, uint64_t file_number, cons

    if (msg.roi_sum)
        roi_sum.AddElement(file_number, msg.roi_sum.value());
+    if (msg.resolution_estimation)
+        resolution_estimation.Add(msg.resolution_estimation.value());

    rad_int_profile += profile;
    rad_int_profile_per_file.at(file_number) += profile;
@@ -64,6 +66,8 @@ Plot JFJochReceiverPlots::GetPlots(const PlotRequest &request) {
            return  strong_pixels.GetPlot(nbins);
        case PlotType::ROISum:
            return roi_sum.GetPlot(nbins);
+        case PlotType::ResEstimation:
+            return resolution_estimation.GetPlot();
        default:
            // Do nothing
            break;
@@ -22,8 +22,9 @@ class JFJochReceiverPlots {
    StatusVector<uint64_t> receiver_delay;
    StatusVector<float> image_collection_efficiency;
    StatusVector<float> unit_cell[6];
-    Histogram<uint64_t> indexing_solution_per_file;
+    SetAverage<uint64_t> indexing_solution_per_file;
    StatusVector<int64_t> roi_sum;
+    FloatHistogram resolution_estimation;

    AzimuthalIntegrationProfile rad_int_profile;
    std::vector<AzimuthalIntegrationProfile> rad_int_profile_per_file;
@@ -19,6 +19,7 @@ void print_usage(Logger &logger) {
    logger.Info("   -p<num> data processing period");
    logger.Info("   -N<num> number of image processing threads");
    logger.Info("   -P<txt> NUMA Policy (none|n2g2|n8g4|n8g4_hbm), none is default");
+    logger.Info("   -D<path> use resonet deep learning model for resolution estimation - path to TorchScript");
 }

 int main(int argc, char **argv) {
@@ -35,6 +36,7 @@ int main(int argc, char **argv) {
    std::string numa_policy_name;
    bool raw_data = false;
    bool force_32bit = false;
+    std::string resonet_path;

    if (argc == 1) {
        print_usage(logger);
@@ -71,6 +73,9 @@ int main(int argc, char **argv) {
            case 'I':
                force_32bit = true;
                break;
+            case 'D':
+                resonet_path = std::string(optarg);
+                break;
            default: /* '?' */
                print_usage(logger);
                exit(EXIT_FAILURE);
@@ -94,6 +99,8 @@ int main(int argc, char **argv) {
    x.Compression(CompressionAlgorithm::BSHUF_LZ4).DataStreams(nstreams);
    if (force_32bit)
        x.FPGAOutputMode(FPGAPixelOutput::Int32);
+    if (!resonet_path.empty())
+        x.NeuralNetModelPath(resonet_path);

    logger.Info("Data streams {} Total modules {} Total images {} Threads {}", nstreams, nmodules, nimages, nthreads);

@@ -0,0 +1,10 @@
+ADD_LIBRARY(JFJochResonet STATIC NeuralNetResPredictor.cpp NeuralNetResPredictor.h)
+TARGET_LINK_LIBRARIES(JFJochResonet JFJochCommon)
+
+IF (${TORCH_FOUND})
+    TARGET_COMPILE_DEFINITIONS(JFJochResonet PUBLIC -DJFJOCH_USE_TORCH)
+    TARGET_LINK_LIBRARIES(JFJochResonet ${TORCH_LIBRARIES})
+    TARGET_INCLUDE_DIRECTORIES(JFJochResonet PUBLIC ${TORCH_INCLUDE_DIRS})
+    ADD_EXECUTABLE(resonet_test resonet_test.cpp)
+    TARGET_LINK_LIBRARIES(resonet_test JFJochResonet JFJochWriter)
+ENDIF()
@@ -0,0 +1,93 @@
+// Copyright (2019-2024) Paul Scherrer Institute
+
+#include "NeuralNetResPredictor.h"
+
+#include <cmath>
+#include "../common/JFJochException.h"
+
+NeuralNetResPredictor::NeuralNetResPredictor(const DiffractionExperiment &in_experiment)
+        : experiment(in_experiment), model_input(512*512)
+#ifdef JFJOCH_USE_TORCH
+          , device(torch::kCUDA)
+#endif
+        {
+    float max_direction = std::max(in_experiment.GetXPixelsNum(), in_experiment.GetYPixelsNum()) / 2.0;
+    pool_factor = std::lround(max_direction / 512.0f);
+    if (pool_factor <= 0)
+        throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Detector size is too small");
+
+    if (pool_factor > 8)
+        throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Detector size is too large");
+#ifdef JFJOCH_USE_TORCH
+    module = torch::jit::load(experiment.GetNeuralNetModelPath());
+    module.to(device);
+#endif
+}
+
+template<class T>
+void NeuralNetResPredictor::PrepareInternal(const T* image) {
+    size_t xpixel = experiment.GetXPixelsNum();
+    size_t ypixel = experiment.GetYPixelsNum();
+    size_t start_x = std::lround(experiment.GetBeamX_pxl());
+    size_t start_y = std::lround(experiment.GetBeamY_pxl());
+
+    for (size_t y = 0; y < 512; y++) {
+        size_t y0 = y * pool_factor + start_y;
+        size_t min_yp = std::min(y0 + pool_factor, ypixel);
+        for (size_t x = 0; x < 512; x++) {
+            float val = 0.0;
+            size_t x0 = x * pool_factor + start_x;
+            size_t min_xp = std::min(x0 + pool_factor, ypixel);
+
+            for (size_t yp = y0; yp < min_yp; yp++) {
+                for (size_t xp = x0; xp < min_xp; xp++) {
+                    int16_t pxl = image[yp * xpixel + xp];
+                    if (val < pxl)
+                        val = pxl;
+                }
+            }
+            float max_pool = floorf(sqrtf(val));
+            model_input[512 * y + x] = max_pool;
+        }
+    }
+}
+
+void NeuralNetResPredictor::Prepare(const int16_t *image) {
+    PrepareInternal(image);
+}
+
+void NeuralNetResPredictor::Prepare(const int32_t *image) {
+    PrepareInternal(image);
+}
+
+size_t NeuralNetResPredictor::GetMaxPoolFactor() const {
+    return pool_factor;
+}
+
+float NeuralNetResPredictor::Inference(const void *image) {
+    if (experiment.GetPixelDepth() == 2)
+        Prepare((int16_t *) image);
+    else
+        Prepare((int32_t *) image);
+
+#ifdef JFJOCH_USE_TORCH
+    auto options = torch::TensorOptions().dtype(at::kFloat);
+    auto model_input_tensor = torch::from_blob(model_input.data(), {1,1,512,512}, options).to(device);
+
+    std::vector<torch::jit::IValue> pixels;
+    pixels.emplace_back(std::move(model_input_tensor));
+
+    auto output = module.forward(pixels).toTensor();
+    auto tensor_output = output[0].item<float>();
+    float two_theta = atanf(((2.0f * experiment.GetPixelSize_mm() / experiment.GetDetectorDistance_mm()) * tensor_output));
+    float stheta = sinf(two_theta * 0.5f);
+    float resolution = experiment.GetWavelength_A() / (2.0f * stheta);
+#else
+    float resolution = 50.0;
+#endif
+    return resolution;
+}
+
+const std::vector<float> &NeuralNetResPredictor::GetModelInput() const {
+    return model_input;
+}
@@ -0,0 +1,37 @@
+// Copyright (2019-2024) Paul Scherrer Institute
+
+#ifndef JUNGFRAUJOCH_NEURALNETRESPREDICTOR_H
+#define JUNGFRAUJOCH_NEURALNETRESPREDICTOR_H
+
+#ifdef JFJOCH_USE_TORCH
+#include <torch/script.h>
+#endif
+
+#include "../common/DiffractionExperiment.h"
+
+// Based on model described in:
+// Mendez, D., Holton, J. M., Lyubimov, A. Y., Hollatz, S., Mathews, I. I., Cichosz, A., Martirosyan, V.,
+// Zeng, T., Stofer, R., Liu, R., Song, J., McPhillips, S., Soltis, M. & Cohen, A. E. (2024).
+// Acta Cryst. D80, 26-43.
+
+class NeuralNetResPredictor {
+    const DiffractionExperiment& experiment;
+    size_t pool_factor;
+    std::vector<float> model_input;
+#ifdef JFJOCH_USE_TORCH
+    torch::Device device;
+    torch::jit::script::Module module;
+#endif
+    template<class T>
+    void PrepareInternal(const T* image);
+public:
+    explicit NeuralNetResPredictor(const DiffractionExperiment& experiment);
+    void Prepare(const int16_t* image);
+    void Prepare(const int32_t* image);
+    float Inference(const void* image);
+    size_t GetMaxPoolFactor() const;
+    const std::vector<float> &GetModelInput() const;
+};
+
+
+#endif //JUNGFRAUJOCH_NEURALNETRESPREDICTOR_H
@@ -0,0 +1,42 @@
+// Copyright (2019-2024) Paul Scherrer Institute
+
+#include <iostream>
+
+#include "NeuralNetResPredictor.h"
+#include "../writer/HDF5Objects.h"
+
+int main(int argc, char **argv) {
+    DiffractionExperiment experiment(DetectorGeometry(8, 2, 8, 36));
+    experiment.DetectorDistance_mm(75).PhotonEnergy_keV(12.4).BeamY_pxl(1136).BeamX_pxl(1090);
+    experiment.NeuralNetModelPath(argv[1]);
+    if (argc == 0)
+        exit(EXIT_FAILURE);
+
+    NeuralNetResPredictor predictor(experiment);
+
+    HDF5ReadOnlyFile data("../../tests/test_data/compression_benchmark.h5");
+    HDF5DataSet dataset(data, "/entry/data/data");
+    HDF5DataSpace file_space(dataset);
+
+    std::vector<int16_t> image_conv (file_space.GetDimensions()[1] * file_space.GetDimensions()[2]);
+
+    std::vector<hsize_t> start = {4,0,0};
+    std::vector<hsize_t> file_size = {1, file_space.GetDimensions()[1], file_space.GetDimensions()[2]};
+    dataset.ReadVector(image_conv, start, file_size);
+
+    std::cout << "Max pooling " << predictor.GetMaxPoolFactor() << std::endl;
+
+    float x = 0;
+    size_t niterations = 25;
+
+    auto start_time = std::chrono::system_clock::now();
+    for (int i = 0; i < niterations; i++)
+        x += predictor.Inference(image_conv.data());
+    auto end_time = std::chrono::system_clock::now();
+    auto elapsed = std::chrono::duration_cast<std::chrono::microseconds>(end_time - start_time);
+    int64_t frequency_Hz = (niterations * 1e6) / (double) (elapsed.count());
+
+    std::cout << ((double) elapsed.count()) / (1e3 * niterations) << " ms" << std::endl;
+    std::cout << frequency_Hz << " Hz" << std::endl;
+    std::cout << "Resolution " << predictor.Inference(image_conv.data()) << std::endl;
+}
@@ -30,9 +30,11 @@ ADD_EXECUTABLE(CatchTest
        TIFFTest.cpp
        JFJochReceiverProcessingTest.cpp
        JPEGTest.cpp
+        NeuralNetResPredictorTest.cpp
+        HistogramTest.cpp
 )

-target_link_libraries(CatchTest JFJochBroker JFJochReceiver JFJochWriter ImageAnalysis CommonFunctions HLSSimulation ExportImage)
+target_link_libraries(CatchTest JFJochBroker JFJochReceiver JFJochWriter JFJochImageAnalysis JFJochCommon JFJochHLSSimulation JFJochImageExport JFJochResonet)
 target_include_directories(CatchTest PRIVATE .)

 INSTALL(TARGETS CatchTest RUNTIME)
@@ -0,0 +1,53 @@
+// Copyright (2019-2024) Paul Scherrer Institute
+
+#include <catch2/catch.hpp>
+
+#include "../common/Histogram.h"
+
+TEST_CASE("SetAverage") {
+    SetAverage<float> h(100);
+    h.Add(80, 30.0);
+    h.Add(50, 20.0);
+    h.Add(50, 30.0);
+    h.Add(0, -2.0);
+    h.Add(100, 50.0);
+
+    auto p = h.GetPlot();
+    REQUIRE(p.x.size() == 100);
+    REQUIRE(p.y.size() == 100);
+
+    CHECK(p.x[0] == 0.0);
+    CHECK(p.x[80] == 80.0);
+    CHECK(p.x[30] == 30.0);
+    CHECK(p.x[99] == 99.0);
+
+    CHECK(p.y[0] == -2.0);
+    CHECK(p.y[50] == 25.0);
+    CHECK(p.y[80] == 30.0);
+    CHECK(p.y[99] == 0.0);
+
+}
+
+TEST_CASE("FloatHistogram") {
+    FloatHistogram h(100, 100.0, 200.0);
+    h.Add(150.5);
+    h.Add(100.2);
+    h.Add(100.9999);
+    h.Add(100.0);
+    h.Add(100.00001);
+    h.Add(101.0);
+    h.Add(200.0);
+
+    auto p = h.GetPlot();
+    REQUIRE(p.x.size() == 100);
+    REQUIRE(p.y.size() == 100);
+
+    CHECK(p.x[0] == 100.5);
+    CHECK(p.x[34] == 134.5);
+    CHECK(p.x[99] == 199.5);
+
+    CHECK(p.y[0] == 4.0);
+    CHECK(p.y[1] == 1.0);
+    CHECK(p.y[50] == 1.0);
+    CHECK(p.y[99] == 0.0);
+}
@@ -173,3 +173,65 @@ TEST_CASE("GenerateResolutionMap") {
    WriteTIFFToFile("ResolutionMap.tiff", spot_finder_resolution_map_int_conv.data(), experiment.GetXPixelsNum(),
                    experiment.GetYPixelsNum(), 4);
 }
+
+TEST_CASE("JFJochIntegrationTest_ZMQ_lysozyme_resolution", "[JFJochReceiver]") {
+    Logger logger("JFJochIntegrationTest_ZMQ_lysozyme_resolution");
+
+    RegisterHDF5Filter();
+
+    const uint16_t nthreads = 4;
+
+    DiffractionExperiment experiment(DetectorGeometry(8,2,8,36));
+    experiment.ImagesPerTrigger(5).NumTriggers(1).DataFileCount(1).UseInternalPacketGenerator(true)
+            .FilePrefix("lyso_test_resolution").ConversionOnFPGA(false)
+            .DetectorDistance_mm(75).BeamY_pxl(1136).BeamX_pxl(1090).PhotonEnergy_keV(12.4)
+            .SetUnitCell(UnitCell{.a = 36.9, .b = 78.95, .c = 78.95, .alpha =90, .beta = 90, .gamma = 90})
+            .NeuralNetModelPath("../../resonet/traced_resnet_model.pt");
+
+    // Load example image
+    HDF5ReadOnlyFile data("../../tests/test_data/compression_benchmark.h5");
+    HDF5DataSet dataset(data, "/entry/data/data");
+    HDF5DataSpace file_space(dataset);
+
+    REQUIRE(file_space.GetDimensions()[2] == experiment.GetXPixelsNum());
+    REQUIRE(file_space.GetDimensions()[1] == experiment.GetYPixelsNum());
+    std::vector<int16_t> image_conv (file_space.GetDimensions()[1] * file_space.GetDimensions()[2]);
+
+    std::vector<hsize_t> start = {4,0,0};
+    std::vector<hsize_t> file_size = {1, file_space.GetDimensions()[1], file_space.GetDimensions()[2]};
+    dataset.ReadVector(image_conv, start, file_size);
+
+    std::vector<int16_t> image_raw_geom(experiment.GetModulesNum() * RAW_MODULE_SIZE);
+    ConvertedToRawGeometry(experiment, image_raw_geom.data(), image_conv.data());
+    logger.Info("Loaded image");
+
+    // Setup acquisition device
+    AcquisitionDeviceGroup aq_devices;
+    std::unique_ptr<HLSSimulatedDevice> test = std::make_unique<HLSSimulatedDevice>(0, 64);
+    test->SetInternalGeneratorFrame(image_raw_geom);
+    aq_devices.Add(std::move(test));
+
+    JFCalibration calib(experiment);
+    HDF5ImagePusher pusher;
+
+    ZMQContext context;
+    context.NumThreads(4);
+
+    JFJochReceiverService service(aq_devices, logger, pusher);
+    service.NumThreads(nthreads);
+
+    SpotFindingSettings settings = DiffractionExperiment::DefaultDataProcessingSettings();
+    settings.signal_to_noise_threshold = 2.5;
+    settings.photon_count_threshold = 5;
+    settings.min_pix_per_spot = 1;
+    settings.max_pix_per_spot = 200;
+    service.SetSpotFindingSettings(settings);
+
+    service.Start(experiment, nullptr);
+    auto receiver_out = service.Stop();
+
+    CHECK(receiver_out.efficiency == 1.0);
+    CHECK(receiver_out.status.indexing_rate == 1.0);
+    CHECK(receiver_out.status.images_sent == experiment.GetImageNum());
+    CHECK(!receiver_out.status.cancelled);
+}
@@ -0,0 +1,53 @@
+// Copyright (2019-2024) Paul Scherrer Institute
+
+#include <catch2/catch.hpp>
+
+#include "../writer/HDF5Objects.h"
+#include "../resonet/NeuralNetResPredictor.h"
+
+TEST_CASE("NeuralNetResPredictor_Prepare", "[LinearAlgebra][Coord]") {
+    DiffractionExperiment experiment(DetectorGeometry(8, 2, 8, 36));
+    experiment.DetectorDistance_mm(75).PhotonEnergy_keV(12.4).BeamX_pxl(1000).BeamY_pxl(1000);
+    experiment.NeuralNetModelPath("../../resonet/traced_resnet_model.pt");
+
+    std::vector<int16_t> v(experiment.GetPixelsNum(),0);
+    v[1000 * experiment.GetXPixelsNum() + 1000] = 100;
+    v[1000 * experiment.GetXPixelsNum() + 1001] = 20;
+    v[1001 * experiment.GetXPixelsNum() + 1000] = 30;
+    v[1001 * experiment.GetXPixelsNum() + 1001] = INT16_MIN;
+
+    v[1050 * experiment.GetXPixelsNum() + 1050] = 52;
+    v[2000 * experiment.GetXPixelsNum() + 1500] = 160;
+    NeuralNetResPredictor predictor(experiment);
+
+    REQUIRE(predictor.GetMaxPoolFactor() == 2);
+
+    predictor.Prepare(v.data());
+    auto nn_input = predictor.GetModelInput();
+    REQUIRE(nn_input[0] == 10);
+    REQUIRE(nn_input[25 * 512 + 25] == 7);
+    REQUIRE(nn_input[500 * 512 + 250] == 12);
+}
+
+TEST_CASE("NeuralNetResPredictor_Inference", "[LinearAlgebra][Coord]") {
+    DiffractionExperiment experiment(DetectorGeometry(8, 2, 8, 36));
+    experiment.DetectorDistance_mm(75).PhotonEnergy_keV(12.4).BeamY_pxl(1136).BeamX_pxl(1090);
+    experiment.NeuralNetModelPath("../../resonet/traced_resnet_model.pt");
+
+    NeuralNetResPredictor predictor(experiment);
+
+    HDF5ReadOnlyFile data("../../tests/test_data/compression_benchmark.h5");
+    HDF5DataSet dataset(data, "/entry/data/data");
+    HDF5DataSpace file_space(dataset);
+
+    std::vector<int16_t> image_conv (file_space.GetDimensions()[1] * file_space.GetDimensions()[2]);
+
+    std::vector<hsize_t> start = {4,0,0};
+    std::vector<hsize_t> file_size = {1, file_space.GetDimensions()[1], file_space.GetDimensions()[2]};
+    dataset.ReadVector(image_conv, start, file_size);
+
+    auto res = predictor.Inference(image_conv.data());
+    std::cout << res << std::endl;
+    REQUIRE(res < 1.5);
+    REQUIRE(res > 1.4);
+}
@@ -1,23 +1,23 @@

 ADD_EXECUTABLE(jfjoch_udp_simulator jfjoch_udp_simulator.cpp UDPSimulator.cpp UDPSimulator.h)
-TARGET_LINK_LIBRARIES(jfjoch_udp_simulator CommonFunctions)
+TARGET_LINK_LIBRARIES(jfjoch_udp_simulator JFJochCommon)

 add_executable(CompressionBenchmark CompressionBenchmark.cpp)
-target_link_libraries(CompressionBenchmark JFJochWriter JFJochReceiver CommonFunctions)
+target_link_libraries(CompressionBenchmark JFJochWriter JFJochReceiver JFJochCommon)

 add_executable(HDF5DatasetWriteTest HDF5DatasetWriteTest.cpp)
-target_link_libraries(HDF5DatasetWriteTest JFJochWriter JFJochReceiver CommonFunctions)
+target_link_libraries(HDF5DatasetWriteTest JFJochWriter JFJochReceiver JFJochCommon)

 ADD_EXECUTABLE(jfjoch_preview_test jfjoch_preview_test.cpp)
-TARGET_LINK_LIBRARIES(jfjoch_preview_test JFJochReceiver ImagePusher CommonFunctions)
+TARGET_LINK_LIBRARIES(jfjoch_preview_test JFJochReceiver ImagePusher JFJochCommon)

 ADD_EXECUTABLE(jfjoch_writer_test jfjoch_writer_test.cpp)
-TARGET_LINK_LIBRARIES(jfjoch_writer_test JFJochReceiver JFJochWriter  ImagePusher CommonFunctions)
+TARGET_LINK_LIBRARIES(jfjoch_writer_test JFJochReceiver JFJochWriter  ImagePusher JFJochCommon)

 ADD_EXECUTABLE(gain_file_statistics gain_file_statistics.cpp)
-TARGET_LINK_LIBRARIES(gain_file_statistics CommonFunctions)
+TARGET_LINK_LIBRARIES(gain_file_statistics JFJochCommon)

 ADD_EXECUTABLE(SpotFindingPerformanceTest SpotFindingPerformanceTest.cpp)
-TARGET_LINK_LIBRARIES(SpotFindingPerformanceTest ImageAnalysis CommonFunctions)
+TARGET_LINK_LIBRARIES(SpotFindingPerformanceTest JFJochImageAnalysis JFJochCommon)

 INSTALL(TARGETS jfjoch_udp_simulator CompressionBenchmark HDF5DatasetWriteTest jfjoch_writer_test RUNTIME)
@@ -1,8 +1,8 @@
 FIND_PACKAGE(HDF5 1.10 REQUIRED)

-ADD_LIBRARY(HDF5Wrappers STATIC HDF5Objects.cpp HDF5Objects.h HDF5DataFile.h  HDF5DataFile.cpp  ../compression/bitshuffle/bshuf_h5filter.c)
-TARGET_LINK_LIBRARIES(HDF5Wrappers Compression ${HDF5_LIBRARIES})
-TARGET_INCLUDE_DIRECTORIES(HDF5Wrappers PUBLIC ${HDF5_INCLUDE_DIRS})
+ADD_LIBRARY(JFJochHDF5Wrappers STATIC HDF5Objects.cpp HDF5Objects.h HDF5DataFile.h  HDF5DataFile.cpp  ../compression/bitshuffle/bshuf_h5filter.c)
+TARGET_LINK_LIBRARIES(JFJochHDF5Wrappers Compression ${HDF5_LIBRARIES})
+TARGET_INCLUDE_DIRECTORIES(JFJochHDF5Wrappers PUBLIC ${HDF5_INCLUDE_DIRS})

 ADD_LIBRARY(JFJochWriter STATIC
        HDF5DataFile.h  HDF5DataFile.cpp
@@ -13,10 +13,10 @@ ADD_LIBRARY(JFJochWriter STATIC
        HDF5ImagePusher.cpp
        HDF5ImagePusher.h)

-TARGET_LINK_LIBRARIES(JFJochWriter HDF5Wrappers CommonFunctions CBORStream2FrameSerialize)
+TARGET_LINK_LIBRARIES(JFJochWriter JFJochHDF5Wrappers JFJochCommon CBORStream2FrameSerialize)

 ADD_EXECUTABLE(HDF5Sum HDF5Sum.cpp)
-TARGET_LINK_LIBRARIES(HDF5Sum HDF5Wrappers)
+TARGET_LINK_LIBRARIES(HDF5Sum JFJochHDF5Wrappers)

 AUX_SOURCE_DIRECTORY(gen/model MODEL_SOURCES)
 ADD_LIBRARY(WriterAPI STATIC ${MODEL_SOURCES} gen/api/DefaultApi.cpp gen/api/DefaultApi.h JFJochWriterHttp.h JFJochWriterHttp.cpp)
@@ -33,12 +33,16 @@ HDF5DataFile::~HDF5DataFile() {
    if (data_file) {
        HDF5Group group_exp(*data_file, "/entry/jungfrau");
        group_exp.NXClass("NXcollection");
+
        group_exp.SaveVector("info", jf_info);
        group_exp.SaveVector("timestamp", timestamp);
        group_exp.SaveVector("storage_cell", storage_cell);
        group_exp.SaveVector("exptime", exptime);
-        group_exp.SaveVector("receiver_aq_dev_delay", receiver_aq_dev_delay);
-        data_file->SaveVector("/entry/result/strong_pixel_count", strong_pixel_count);
+        group_exp.SaveVector("receiverAqDevDelay", receiver_aq_dev_delay);
+
+        data_file->SaveVector("/entry/result/strongPixelCount", strong_pixel_count);
+        if (!resolution_estimation.empty())
+            data_file->SaveVector("/entry/result/resolutionEstimation", resolution_estimation);
    }
 }

@@ -58,21 +62,18 @@ void HDF5DataFile::CreateFile() {
    data_set_indexed_lattice = std::make_unique<HDF5DataSet>(*data_file, "/entry/result/latticeIndexed");
    if (!rad_int_bin_to_q.empty())
        data_set_az_int = std::make_unique<HDF5DataSet>(*data_file, "/entry/result/azimIntegration");
-
-    jf_info.resize(1);
-    receiver_aq_dev_delay.resize(1);
-    timestamp.resize(1);
-    storage_cell.resize(1);
-    exptime.resize(1);
-    strong_pixel_count.resize(1);
 }

 void HDF5DataFile::Write(const DataMessage &msg, uint64_t image_number) {
    std::lock_guard<std::mutex> lock(hdf5_mutex);
-    if (!data_file)
-        CreateFile();
+    bool new_file = false;

-    if (image_number > max_image_number) {
+    if (!data_file) {
+        CreateFile();
+        new_file = true;
+    }
+
+    if (new_file || (static_cast<int64_t>(image_number) > max_image_number)) {
        max_image_number = image_number;
        data_set->SetExtent({max_image_number+1, ypixel, xpixel});
        data_set_spot_x->SetExtent({max_image_number+1, max_spots});
@@ -93,6 +94,9 @@ void HDF5DataFile::Write(const DataMessage &msg, uint64_t image_number) {
        timestamp.resize(max_image_number + 1);
        exptime.resize(max_image_number + 1);
        storage_cell.resize(max_image_number + 1);
+
+        if (msg.resolution_estimation)
+            resolution_estimation.resize(max_image_number + 1);
    }

    nimages++;
@@ -128,6 +132,9 @@ void HDF5DataFile::Write(const DataMessage &msg, uint64_t image_number) {
    storage_cell[image_number] = msg.storage_cell;
    exptime[image_number] = msg.exptime;

+    if (msg.resolution_estimation)
+        resolution_estimation[image_number] = msg.resolution_estimation.value();
+
    if (!msg.az_int_profile.empty() && (msg.az_int_profile.size() == rad_int_bin_to_q.size()))
        data_set_az_int->WriteVec(msg.az_int_profile, {image_number, 0}, {1, rad_int_bin_to_q.size()});

@@ -13,7 +13,7 @@

 struct HDF5DataFileStatistics {
    std::string filename;
-    uint64_t max_image_number;
+    size_t max_image_number;
    uint64_t total_images;
 };

@@ -49,6 +49,7 @@ class HDF5DataFile {
    std::vector<uint32_t> strong_pixel_count;
    std::vector<int64_t> receiver_aq_dev_delay;
    std::vector<float> rad_int_bin_to_q;
+    std::vector<float> resolution_estimation;

    const size_t max_spots;