jfjoch_scale: Add scaling iteration count
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@@ -65,6 +65,7 @@ void print_usage(Logger &logger) {
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logger.Info(" -w<num> Refine image wedge during scaling with starting wedge value");
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logger.Info(" -p<num> Minimum partiality to accept reflection (default: 0.02)");
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logger.Info(" -q<num> Per-image CC limit in percent (default: no limit)");
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logger.Info(" -i<num> Number of scaling iterations with no reference data (default: 3) ");
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}
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void trim_in_place(std::string &t) {
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@@ -155,6 +156,7 @@ int main(int argc, char **argv) {
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std::string ref_mtz;
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double min_partiality = 0.02;
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double min_image_cc = 0.0;
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int64_t scaling_iter = 3;
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IndexingAlgorithmEnum indexing_algorithm = IndexingAlgorithmEnum::Auto;
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@@ -291,6 +293,13 @@ int main(int argc, char **argv) {
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exit(EXIT_FAILURE);
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}
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break;
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case 'i':
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scaling_iter = atoi(optarg);
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if (scaling_iter <= 0) {
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logger.Error("Invalid scaling iteration count: {}", scaling_iter);
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exit(EXIT_FAILURE);
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}
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break;
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default:
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print_usage(logger);
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exit(EXIT_FAILURE);
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@@ -600,7 +609,7 @@ int main(int argc, char **argv) {
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ScalingResult scale_result(0);
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auto scale_start = std::chrono::steady_clock::now();
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for (int i = 0; i < 3; i++) {
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for (int i = 0; i < scaling_iter; i++) {
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auto iter_start = std::chrono::steady_clock::now();
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auto merge_result = indexer.Merge(false, false);
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scale_result = indexer.ScaleAllImages(merge_result.merged);
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+10
-1
@@ -48,6 +48,7 @@ void print_usage(Logger &logger) {
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logger.Info(" -w<num> Refine image wedge during scaling with starting wedge value");
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logger.Info(" -p<num> Minimum partiality to accept reflection (default: 0.02)");
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logger.Info(" -q<num> Per-image CC limit in percent (default: no limit)");
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logger.Info(" -i<num> Number of scaling iterations with no reference data (default: 3) ");
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}
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int main(int argc, char **argv) {
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@@ -71,6 +72,7 @@ int main(int argc, char **argv) {
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std::string ref_mtz;
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double min_partiality = 0.02;
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double min_image_cc = 0.0;
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int64_t scaling_iter = 3;
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PartialityModel partiality_model = PartialityModel::Fixed;
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@@ -139,6 +141,13 @@ int main(int argc, char **argv) {
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exit(EXIT_FAILURE);
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}
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break;
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case 'i':
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scaling_iter = atoi(optarg);
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if (scaling_iter <= 0) {
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logger.Error("Invalid scaling iteration count: {}", scaling_iter);
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exit(EXIT_FAILURE);
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}
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break;
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default:
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print_usage(logger);
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exit(EXIT_FAILURE);
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@@ -236,7 +245,7 @@ auto mosaicity = dataset->mosaicity_deg;
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ScalingResult scale_result(0);
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auto scale_start = std::chrono::steady_clock::now();
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for (int i = 0; i < 3; i++) {
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for (int i = 0; i < scaling_iter; i++) {
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auto iter_start = std::chrono::steady_clock::now();
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if (reference_data.empty()) {
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