XtalOptimizer: Work in progress to find out what is wrong with rotation axis

image_analysis/RotationIndexer.cpp

@@ -87,6 +87,7 @@ void RotationIndexer::TryIndex() {
             .refine_beam_center = true,
             .refine_distance_mm =  false,
             .refine_detector_angles = true,
+            .refine_rotation_axis = true,
             .index_ice_rings = experiment.GetIndexingSettings().GetIndexIceRings(),
             .axis = axis_
         };
@@ -97,6 +98,7 @@ void RotationIndexer::TryIndex() {
         if (XtalOptimizer(data, v_sel)) {
             indexed_lattice = data.latt;
             updated_geom_ = data.geom;
+            axis_ = data.axis;
         }
         PredictionRotationSettings pred_settings{
             .high_res_A = 1.0,
@@ -139,7 +141,8 @@ std::optional<RotationIndexerResult> RotationIndexer::ProcessImage(int64_t image
     return RotationIndexerResult{
         .lattice = indexed_lattice.value(),
         .search_result = search_result_,
-        .geom = updated_geom_
+        .geom = updated_geom_,
+        .axis = axis_
     };
 }
 
@@ -149,7 +152,8 @@ std::optional<RotationIndexerResult> RotationIndexer::GetLattice() {
     return RotationIndexerResult{
         .lattice = indexed_lattice.value(),
         .search_result = search_result_,
-        .geom = updated_geom_
+        .geom = updated_geom_,
+        .axis = axis_
     };
 }