jfjoch_process: Fixes to parameter logic

tools/jfjoch_process.cpp

@@ -228,7 +228,7 @@ int main(int argc, char **argv) {
                 break;
             case 'D':
                 d_min_scale_merge = atof(optarg);
-                logger.Info("High resolution limit for scaling/merging set to {:.2f} A", d_min_spot_finding);
+                logger.Info("High resolution limit for scaling/merging set to {:.2f} A", d_min_scale_merge.value());
                 break;
             case 'S':
                 space_group_number = atoi(optarg);
@@ -357,10 +357,10 @@ int main(int argc, char **argv) {
         scaling_settings.HighResolutionLimit_A(d_min_scale_merge.value());
     scaling_settings.MergeFriedel(!anomalous_mode);
     scaling_settings.RefineB(refine_bfactor);
-    if (wedge_for_scaling.has_value()) {
-        scaling_settings.RefineRotationWedge(true);
+    scaling_settings.RefineRotationWedge(refine_wedge);
+    if (wedge_for_scaling.has_value())
         scaling_settings.RotationWedgeForScaling(wedge_for_scaling);
-    }
+
     experiment.ImportScalingSettings(scaling_settings);
 
     SpotFindingSettings spot_settings;
@@ -491,7 +491,6 @@ int main(int argc, char **argv) {
             std::chrono::duration<float> image_duration = image_end_time - image_start_time;
 
             msg.processing_time_s = image_duration.count();
-            msg.original_number = msg.number;
             msg.run_number = experiment.GetRunNumber();
             msg.run_name = experiment.GetRunName();
 
@@ -715,7 +714,7 @@ int main(int argc, char **argv) {
     logger.Info("Total throughput:{:.2f} MB/s", throughput_MBs);
 
     // Print extended stats similar to Receiver
-    if (!end_msg.indexing_rate.has_value()) {
+    if (end_msg.indexing_rate.has_value()) {
         logger.Info("Indexing rate:   {:.2f}%", end_msg.indexing_rate.value() * 100.0);
     }