RotationIndexer: Only one indexing try after enough rotation
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@@ -158,6 +158,6 @@ void IndexAndRefine::ProcessImage(DataMessage &msg,
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std::optional<RotationIndexerResult> IndexAndRefine::Finalize() {
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if (rotation_indexer)
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return rotation_indexer->Finalize();
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return rotation_indexer->GetLattice();
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return {};
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}
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@@ -41,6 +41,8 @@ void RotationIndexer::SetLattice(const CrystalLattice &lattice) {
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}
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void RotationIndexer::TryIndex() {
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indexing_tried = true;
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// Index
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std::vector<SpotToSave> v_sel;
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std::vector<Coord> coords_sel;
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@@ -57,7 +59,6 @@ void RotationIndexer::TryIndex() {
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idx.begin() + max_spots,
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idx.end(),
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[this](std::size_t a, std::size_t b) {
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// Replace `.intensity` with the actual SpotToSave intensity member
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return v_[a].intensity > v_[b].intensity;
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}
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);
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@@ -111,7 +112,7 @@ std::optional<RotationIndexerResult> RotationIndexer::ProcessImage(int64_t image
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const auto rot = axis_->GetTransformation(image);
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if (!indexed_lattice && image >= last_accumulated_image + image_stride) {
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if (!indexing_tried && image >= last_accumulated_image + image_stride) {
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v_.reserve(v_.size() + spots.size());
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coords_.reserve(coords_.size() + spots.size());
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@@ -125,29 +126,16 @@ std::optional<RotationIndexerResult> RotationIndexer::ProcessImage(int64_t image
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accumulated_images++;
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last_accumulated_image = image;
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if (!indexed_lattice && accumulated_images >= min_images_for_indexing && image >= first_image_to_try_indexing) {
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if (accumulated_images >= min_images_for_indexing && image >= first_image_to_try_indexing)
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TryIndex();
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// If fails increase rotation range by a factor of two
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if (!indexed_lattice)
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first_image_to_try_indexing *= 2;
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}
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}
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if (indexed_lattice) {
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return RotationIndexerResult{
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.lattice = indexed_lattice->Multiply(rot.transpose()),
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.search_result = search_result_,
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.geom = updated_geom_
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};
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}
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return {};
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return GetLattice();
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}
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std::optional<RotationIndexerResult> RotationIndexer::Finalize() {
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std::optional<RotationIndexerResult> RotationIndexer::GetLattice() {
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if (!indexed_lattice)
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TryIndex();
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if (!indexed_lattice)
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return std::nullopt;
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return {};
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return RotationIndexerResult{
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.lattice = indexed_lattice.value(),
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.search_result = search_result_,
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@@ -28,10 +28,11 @@ class RotationIndexer {
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mutable std::mutex m;
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const DiffractionExperiment& experiment;
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constexpr static int64_t max_spots = 60000;
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constexpr static int64_t max_spots = 10000;
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constexpr static int64_t min_images_for_indexing = 10;
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const bool index_ice_rings;
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bool indexing_tried = false;
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std::vector<SpotToSave> v_;
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std::vector<Coord> coords_;
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@@ -50,13 +51,12 @@ class RotationIndexer {
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std::optional<CrystalLattice> indexed_lattice;
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void TryIndex();
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public:
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RotationIndexer(const DiffractionExperiment& x, IndexerThreadPool& indexer);
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void SetLattice(const CrystalLattice &lattice);
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std::optional<RotationIndexerResult> ProcessImage(int64_t image, const std::vector<SpotToSave>& spots);
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std::optional<RotationIndexerResult> Finalize();
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std::optional<RotationIndexerResult> GetLattice();
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};
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#endif //JFJOCH_ROTATIONINDEXER_H
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@@ -74,7 +74,7 @@ TEST_CASE("RotationIndexer") {
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CHECK(cnt == 20);
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auto ret = indexer.Finalize();
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auto ret = indexer.GetLattice();
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REQUIRE(ret.has_value());
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auto uc = ret->lattice.GetUnitCell();
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auto uc_ref = latt_base.GetUnitCell();
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