fix: update aarescan api #225
+2
-2
@@ -13,7 +13,7 @@ dependencies = [
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"pyJWT",
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"pyzmq",
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"opencv-python-headless",
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"PySide6==6.9.0",
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"PySide6",
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"requests",
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"pyepics~=3.5",
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"redis",
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@@ -26,7 +26,7 @@ dependencies = [
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"psi-pshell==2.1.0",
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"bec_lib>=3.130.3",
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"bec-ipython-client>=3.130.3",
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"aarescan-client>=1.0.0rc14",
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"aarescan-client>=1.0.0rc15",
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"aarelcinfer-client==0.1.1a8",
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"matplotlib>=3.10.3",
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"httpx>=0.28.1",
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@@ -421,7 +421,7 @@ class RasterService:
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grid_elem_size_x_um=request.grid_size_mm.x * 1000,
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grid_elem_count_x=request.n_x,
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grid_elem_count_y=request.n_y,
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time_sec=request.exp_time_s,
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time_per_element_s=request.exp_time_s,
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run_async=True,
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)
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self.ctx.deps.devs.aerotech.wait_till_done(
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@@ -45,7 +45,7 @@ class RotationService:
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self.ctx.deps.devs.aerotech.screening_scan(
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rotation_deg=request.incr_omega_deg,
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wedge_deg=request.wedge_omega_deg,
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time_sec=total_time,
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time_per_element_s=request.exp_time_s,
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steps=request.steps,
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run_async=True,
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)
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@@ -142,7 +142,7 @@ class AerotechController:
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):
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payload = RotationRequest(
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rotation_deg=rotation_deg,
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time_sec=time_sec,
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total_time_sec=time_sec,
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start_pos_deg=start_pos_deg,
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run_async=run_async,
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)
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@@ -162,7 +162,7 @@ class AerotechController:
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):
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payload = RotationRequest(
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rotation_deg=rotation_deg,
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time_sec=time_sec,
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total_time_sec=time_sec,
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start_pos_deg=start_pos_deg,
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run_async=run_async,
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)
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@@ -181,7 +181,7 @@ class AerotechController:
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self,
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grid_elem_count_y: int,
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grid_elem_size_y_um: float,
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time_sec: float,
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time_per_element_s: float,
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grid_elem_size_x_um: float,
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grid_elem_count_x: int,
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run_async: bool = False,
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@@ -191,7 +191,7 @@ class AerotechController:
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grid_elem_count_y=grid_elem_count_y,
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grid_elem_size_x_um=grid_elem_size_x_um,
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grid_elem_size_y_um=grid_elem_size_y_um,
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time_sec=time_sec,
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time_per_element_sec=time_per_element_s,
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run_async=run_async,
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)
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logger.debug(f"Payload sent to AareScan for grid_scan execution: {payload}")
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@@ -221,7 +221,7 @@ class AerotechController:
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grid_elem_count_y=grid_elem_count_y,
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grid_elem_size_x_um=grid_elem_size_x_um,
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grid_elem_size_y_um=grid_elem_size_y_um,
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time_sec=time_sec,
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time_per_element_sec=time_sec,
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run_async=run_async,
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)
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logger.debug(f"Payload sent to AareScan for grid_scan validation: {payload}")
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@@ -241,14 +241,14 @@ class AerotechController:
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self,
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rotation_deg: float,
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wedge_deg: float,
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time_sec: float,
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time_per_element_s: float,
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steps: int,
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run_async: bool = False,
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):
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payload = ScreenRequest(
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rotation_deg=rotation_deg,
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wedge_deg=wedge_deg,
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time_sec=time_sec,
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time_per_element_sec=time_per_element_s,
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steps=steps,
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run_async=run_async,
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)
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@@ -276,7 +276,7 @@ class AerotechController:
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payload = ScreenRequest(
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rotation_deg=rotation_deg,
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wedge_deg=wedge_deg,
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time_sec=time_sec,
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time_per_element_sec=time_sec,
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steps=steps,
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run_async=run_async,
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)
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@@ -92,13 +92,13 @@ class RotationDataCollectionPanel(ScanSettingsPanel):
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self.screening_type = QComboBox(parent=self)
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self.screening_type.addItem("1 image", {"steps": 1, "omega_step_deg": 0})
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self.screening_type.addItem("2 images every 90°", {"steps": 2, "omega_step_deg": 90})
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self.screening_type.addItem("4 images every 90°", {"steps": 4, "omega_step_deg": 90})
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self.screening_type.addItem("3 images every 60°", {"steps": 3, "omega_step_deg": 60})
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self.screening_type.addItem("4 images every 60°", {"steps": 4, "omega_step_deg": 60})
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self.screening_type.addItem("2 images every 45°", {"steps": 2, "omega_step_deg": 45})
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self.screening_type.addItem("4 images every 45°", {"steps": 4, "omega_step_deg": 45})
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self.screening_type.addItem("5 images every 45°", {"steps": 5, "omega_step_deg": 45})
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self.screening_type.addItem("2 images, 90° apart", {"steps": 2, "omega_step_deg": 90})
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self.screening_type.addItem("4 images, 90° apart", {"steps": 4, "omega_step_deg": 90})
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self.screening_type.addItem("3 images, 60° apart", {"steps": 3, "omega_step_deg": 60})
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self.screening_type.addItem("4 images, 60° apart", {"steps": 4, "omega_step_deg": 60})
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self.screening_type.addItem("2 images, 45° apart", {"steps": 2, "omega_step_deg": 45})
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self.screening_type.addItem("4 images, 45° apart", {"steps": 4, "omega_step_deg": 45})
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self.screening_type.addItem("5 images, 45° apart", {"steps": 5, "omega_step_deg": 45})
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self._layout.addWidget(self.screening_type, 5, 0, 1, 6)
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@@ -45,12 +45,12 @@ def test_init_simulated():
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assert controller._simulated is True
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def test_cancel(aerotech_controller, mock_aerotech_api):
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def test_cancel(aerotech_controller: AerotechController, mock_aerotech_api):
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aerotech_controller.cancel()
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mock_aerotech_api.cancel_post.assert_called_once()
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def test_is_idle(aerotech_controller, mock_aerotech_api):
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def test_is_idle(aerotech_controller: AerotechController, mock_aerotech_api):
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mock_aerotech_api.status_get.return_value.state = "Idle"
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assert aerotech_controller.is_idle() is True
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@@ -58,7 +58,7 @@ def test_is_idle(aerotech_controller, mock_aerotech_api):
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assert aerotech_controller.is_idle() is False
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def test_get_position(aerotech_controller, mock_aerotech_api):
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def test_get_position(aerotech_controller: AerotechController, mock_aerotech_api):
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status = MagicMock()
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status.x.pos = 1.0
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status.y.pos = 2.0
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@@ -73,39 +73,39 @@ def test_get_position(aerotech_controller, mock_aerotech_api):
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assert pos.omega_deg == 90.0
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def test_move_home(aerotech_controller, mock_aerotech_api):
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def test_move_home(aerotech_controller: AerotechController, mock_aerotech_api):
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aerotech_controller.move_home()
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mock_aerotech_api.position_post.assert_called_once()
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def test_position(aerotech_controller, mock_aerotech_api):
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def test_position(aerotech_controller: AerotechController, mock_aerotech_api):
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target = AerotechCoordinate(at_mm=Coordinate(x=1, y=2, z=3), omega_deg=45)
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aerotech_controller.position(target)
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mock_aerotech_api.position_post.assert_called_once()
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def test_rotation_scan(aerotech_controller, mock_aerotech_api):
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def test_rotation_scan(aerotech_controller: AerotechController, mock_aerotech_api):
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aerotech_controller.rotation_scan(rotation_deg=360, time_sec=10, start_pos_deg=0)
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mock_aerotech_api.rotation_scan_post.assert_called_once()
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def test_grid_scan(aerotech_controller, mock_aerotech_api):
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def test_grid_scan(aerotech_controller: AerotechController, mock_aerotech_api):
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aerotech_controller.grid_scan(
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grid_elem_count_y=10,
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grid_elem_size_y_um=10,
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grid_elem_count_x=10,
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grid_elem_size_x_um=10,
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time_sec=5,
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time_per_element_s=5,
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)
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mock_aerotech_api.grid_scan_post.assert_called_once()
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def test_screening_scan(aerotech_controller, mock_aerotech_api):
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aerotech_controller.screening_scan(rotation_deg=10, wedge_deg=2, time_sec=1, steps=5)
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def test_screening_scan(aerotech_controller: AerotechController, mock_aerotech_api):
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aerotech_controller.screening_scan(rotation_deg=10, wedge_deg=2, time_per_element_s=1, steps=5)
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mock_aerotech_api.screening_post.assert_called_once()
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def test_api_error(aerotech_controller, mock_aerotech_api):
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def test_api_error(aerotech_controller: AerotechController, mock_aerotech_api):
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mock_aerotech_api.status_get.side_effect = Exception("API Error")
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with pytest.raises(AerotechCommunicationError):
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aerotech_controller.is_idle()
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