update to conf.py to resovle import errors
This commit is contained in:
appleb_m
@@ -53,6 +53,7 @@ autodoc_mock_imports = [
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'redis_lock',
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'fastapi',
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'uvicorn',
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'pydantic'
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]
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exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
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@@ -1,26 +0,0 @@
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0.2.69
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- check beamline state before running raster, rotation and automation
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- lowered polling rate of daq status to improve GUI performance
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- robot drys then parks after repeated mount failures
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0.2.68:
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- added check box to numberlineedits to switch between user input and spreadsheet
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- re-enabled MLprediction
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- fixed bug in gui where manual sample couldnt be created when run nubmer was negative.
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- Combined beamline view now split vertically not horizontally
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- New error handling in DAQ for robot mounting errors
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- Error box pop ups in GUI when sample gripper detection error occurs
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- Automation queue pauses if sample gripper detection error occurs multiple times to allow robot dry, if continues stops and wiats for user interverntion
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- added ingest_scan to send rotation and screening result to db
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0.2.67:
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- added run number to sampleshortinfo
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- ingest raster result, including beam center to database
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- aerotech goes to mount postion for manual mount
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- logger config correctly expands file path for logger location.
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- smart_rotiation_panel fix - but will be mvoed to DAQ in future update
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- Fluoresence scan can be saved to CSV with right click
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- Wait for ready before sending Tell to dry
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0.2.66:
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- moved rastergridingestmodel and centreofmassmodel from models to raster_grid.py
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- after raster load closest image to new centre
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-131
@@ -1,131 +0,0 @@
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# Configuration file for the Sphinx documentation builder.
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#
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# For the full list of built-in configuration values, see the documentation:
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# https://www.sphinx-doc.org/en/master/usage/configuration.html
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# -- Project information -----------------------------------------------------
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# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
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import os
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import sys
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# Add project root to Python path so autodoc can import modules
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sys.path.insert(0, os.path.abspath('..'))
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sys.path.insert(0, os.path.abspath('../daq/src')) # <-- ensure 'src' is on path
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sys.path.insert(0, os.path.abspath('../gui/src'))
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sys.path.insert(0, os.path.abspath('../common/src'))
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project = 'AareDAQ'
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copyright = '2025, Paul Scherrer Institute'
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author = 'M. Vears Appleby'
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release = '0.2.70'
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master_doc = 'index'
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root_doc = 'index'
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# -- General configuration ---------------------------------------------------
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# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
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autodoc_mock_imports = [
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'aaredb',
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'aareDBclient',
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'numpy',
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'requests',
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'PyYAML',
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'loguru',
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'utility_tools',
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'extract_results',
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'testxds',
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'db_slurm_handler',
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'websocket',
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'dateutil'
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]
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exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
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extensions = [
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'myst_parser',
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'sphinx_immaterial',
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'sphinx.ext.autodoc', # Add this
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'sphinx.ext.viewcode', # Optional: source code links
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'sphinx.ext.napoleon' # Optional: Google/NumPy docstring support
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]
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templates_path = ['_templates']
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exclude_patterns = []
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myst_enable_extensions = ['linkify', 'smartquotes']
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myst_heading_anchor = 3
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# -- Options for HTML output -------------------------------------------------
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# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
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html_theme = 'sphinx_immaterial'
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# html_static_path = ['../broker/redoc-static.html']
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#html_theme_options = {
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# 'sidebar_width': '300px',
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# 'page_width': 'auto'
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#}
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# html_theme_options = {
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# 'repo_url': 'https://gitea.psi.ch/mx/aaredaq',
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# 'repo_name': 'AareDaq',
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# 'nav_title': 'PSI AareDaq',
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# # 'html_minify': True,
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# # 'css_minify': True,
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# 'globaltoc_depth': 2,
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# # 'repo_type': 'gitlab',
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# 'color_primary': 'indigo',
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# 'color_accent': 'lime',
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# # 'logo_icon': ''
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# }
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# html_logo = 'jfjoch.png'
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# html_favicon = 'jfjoch.png'
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html_theme_options = {
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"icon": {
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"repo": "fontawesome/brands/github", # or gitlab/gitea icon
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},
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"site_url": "https://gitea.psi.ch/mx/aaredaq",
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"repo_url": "https://gitea.psi.ch/mx/aaredaq",
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"repo_name": "AareDAQ",
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"palette": [
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{
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"media": "(prefers-color-scheme: light)",
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"scheme": "default",
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"primary": "indigo",
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"accent": "lime",
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"toggle": {
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"icon": "material/lightbulb-outline",
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"name": "Switch to dark mode",
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},
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},
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{
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"media": "(prefers-color-scheme: dark)",
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"scheme": "slate",
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"primary": "indigo",
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"accent": "lime",
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"toggle": {
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"icon": "material/lightbulb",
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"name": "Switch to light mode",
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},
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},
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],
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"features": [
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"navigation.expand",
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"navigation.sections",
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"navigation.top",
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"search.share",
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"toc.follow",
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],
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"globaltoc_collapse": False,
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}
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html_theme_options["google_fonts"] = []
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html_sidebars = {
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"**": ["logo-text.html", "globaltoc.html", "searchbox.html"]
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}
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html_show_sourcelink = False
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# language = "Python"
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@@ -1,30 +0,0 @@
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.. AareProc documentation master file, created by
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sphinx-quickstart on Sun Dec 21 14:22:05 2025.
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You can adapt this file completely to your liking, but it should at least
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contain the root `toctree` directive.
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Welcome to AareDAQ's documentation!
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====================================
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.. toctree::
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:maxdepth: 2
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:caption: Contents:
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:glob:
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README
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CHANGELOG
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.. toctree::
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:maxdepth: 4
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:caption: OpenAPI Python client
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modules/src.aaredaq
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modules/src.mxlibs3
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Indices and tables
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==================
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* :ref:`genindex`
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* :ref:`modindex`
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* :ref:`search`
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@@ -1,37 +0,0 @@
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alabaster==1.0.0
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babel==2.16.0
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beautifulsoup4==4.12.3
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certifi==2024.8.30
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charset-normalizer==3.4.0
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css-html-js-minify==2.5.5
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docutils==0.21.2
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idna==3.10
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imagesize==1.4.1
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Jinja2==3.1.4
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linkify-it-py==2.0.3
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lxml==5.3.0
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markdown-it-py==3.0.0
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MarkupSafe==3.0.2
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mdit-py-plugins==0.4.2
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mdurl==0.1.2
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myst-parser==4.0.0
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packaging==24.2
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Pygments==2.18.0
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python-slugify==8.0.4
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PyYAML==6.0.2
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requests==2.32.3
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snowballstemmer==2.2.0
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soupsieve==2.6
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Sphinx==8.1.3
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sphinx-material==0.0.36
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sphinxcontrib-applehelp==2.0.0
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sphinxcontrib-devhelp==2.0.0
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sphinxcontrib-htmlhelp==2.1.0
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sphinxcontrib-jsmath==1.0.1
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sphinxcontrib-qthelp==2.0.0
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sphinxcontrib-serializinghtml==2.0.0
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text-unidecode==1.3
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uc-micro-py==1.0.3
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Unidecode==1.3.8
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urllib3==2.2.3
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sphinx_immaterial==0.13.8
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