DAQ: updated when b_factor and best res are calculated and better error handling during auto center

daq/src/aaredaq/daq.py

@@ -475,16 +475,12 @@ class AareDAQ:
         print('before centre_of_mass')
         print("COM by low res spots")
 
+
         result_array = create_quality_filtered_array(images, 'spots_low_res', min_spots=None,
-                                                          min_efficiency=1.0, min_background=None)
+                                                          min_efficiency=1.0, min_background=None, min_low_res_spots=10.0)
         self.crystal_size = get_xtal_size(self.crystal_size, result_array, r)
         grid_mm_x, grid_mm_y, com = raster_centre_of_mass(result_array, r)
 
-        result_list = get_result_list_from_com(images, com)
-
-        self.last_best_b_factor = get_best_b_factor(result_list)
-        self.last_best_res = get_best_res(result_list)
-
         if grid_mm_x is None or grid_mm_y is None:
             print(f"using old method as COM is none or nan")
             grid_mm_x, grid_mm_y = identify_crystal_raster(result, r)
@@ -492,6 +488,11 @@ class AareDAQ:
         if r.n_x == 1:
             new_delta_mm = self.sample_geometry.smargon_nudge(Coordinate(x=0, y=grid_mm_y))
         else:
+            result_list = get_result_list_from_com(images, com)
+            print(result_list)
+            self.last_best_b_factor = get_best_b_factor(result_list)
+            self.last_best_res = get_best_res(result_list)
+            print("b_factor: ", self.last_best_b_factor, " best_res: ", self.last_best_res)
             new_delta_mm = self.sample_geometry.smargon_nudge(Coordinate(x=grid_mm_x, y=grid_mm_y))
 
         print('after centre_of_mass')
@@ -990,7 +991,6 @@ class AareDAQ:
 
     def measure(self, sample: SampleShortInfo) -> float:
         start = time.perf_counter()
-
         formatted_date = datetime.now().strftime('%Y%m%d')
         sample_prefix = "{}/{}/{:02d}/{}".format(
             formatted_date,
@@ -1033,6 +1033,8 @@ class AareDAQ:
                 grid_size_mm=Coordinate(x=geom.beam_size_mm.x * 0.5, y=geom.beam_size_mm.y * 0.5),
                 omega_deg=0
             )):
+                params = self.smart_params
+                print(params)
                 self.__cfg.zoom_mode = ZoomModeEnum.User
                 self.__devs.samcam_settings = self.__cfg.zoom_settings.get_camera_settings(self.zoom)
                 self.__rotation( RotationScanRequest(start_omega_deg=0,
@@ -1042,12 +1044,14 @@ class AareDAQ:
                                                      incr_omega_deg=0.2,
                                                      steps=900,))
             else:
+                print("auto center failed")
                 self.__aare.axc_failed(sample)
             self.zoom = 1
             self.__cfg.zoom_mode = ZoomModeEnum.User
             self.__devs.samcam_settings = self.__cfg.zoom_settings.get_camera_settings(self.zoom)
             self.__cfg.state_busy = False
-        except Exception:
+        except Exception as e:
+            print(f"Error in measure: {e}")
             self.__aare.sample_failed(sample)
             self.__cfg.state_busy = False
             end = time.perf_counter()