ch.psi.imagej.hdf5/Readme.md
2014-03-06 11:02:50 +01:00

1.8 KiB

Overview

ZMQ ImageJ is an ImageJ plugin for viewing images transmitted via ZMQ. It can handle data streamed via the message format defined in ZMQ Data Steaming.

Installation

To install the plugin into ImageJ drop the all-in-one jar into the plugins directory of ImageJ. Afterwards (re)start ImageJ and open the plugin via Plugins > ZeroMQ Viewer. A plugin window will be opened where source, port and method can be specified. Once clicked on Start and images are streamed from the source an additional window will open showing the images.

Usage

While using the ZeroMQ Viewer Plugin ImageJ need to be configured to have more memory. This can be done in the run file located in the ImageJ discribution. Add/Modify following flag: -Xmx1024m

Development

To build the code run following maven command/goals: mvn clean compile assembly:single

References

http://fiji.sc/wiki/index.php/Description_of_ImageJ's_plugin_architecture

Installation

Drop jar into plugins directory of the ImageJ installation.

Linux 32Bit

Edit the run file of your ImageJ installation ./jre/bin/java -Djava.library.path=./lib/linux32 -Xmx512m -jar ij.jar

Linux 64Bit

Edit the run file of your ImageJ installation java -Djava.library.path=./lib/linux64 -Xmx512m -jar ij.jar

Windows 32Bit

Edit the "ImageJ.cfg" of your ImageJ installation C:\Programme\Java\jdk1.5.0_14\bin\javaw.exe -Djava.library.path=lib\win32 -Xmx640m -cp ij.jar ij.ImageJ

Mac 32Bit

Edit the run file of your ImageJ installation java -Djava.library.path=./lib/mac32 -Xmx512m -jar ij.jar

References

Inspired by: ImageJ HDF Plugin of Matthias Schlachter Chair of Pattern Recognition and Image Processing, University of Freiburg, Germany. https://code.google.com/p/imagej-hdf/